Non-Coding RNA Search

LyN1-MLN01E030023

Sequence:


               
               TATTTAAAGATAACTCACCCAGATAGCATTTCTTTCATGATCTTTGAGCTTCCAAAAGAC
AATTCTAGTAAGTAGATCCTTGATGAAAAGTCAGTTGCGTGTGCATGAATGTGTGGACAA
CTTATGTCTCTGACATGTGAGACTTTTATTTGATGCTTGGGAAGACTTCCTCTCACATGG
GTTGAATCTGGTCTCTCTGTGCCTCCTCATATTCCACTCAGTGCAGTAATTATCACGGGA
TGTTAGCAGTGGTGTTTCTCATTAAATTTTAAAACTTAATTAGAACTTGATGTCTTTGAA
AGCTAATTTCTTATATTTAAAGTCCCAGATCCTGCTTTTATAACTGATTTTTGGCAAGCC
GGTTGCATGTGGCAGTACATTTGATGGCTGCTTTGGTCGGTTTGTCACTTTTGGGATTAG
CCAACAAGTCCCCTGATTCTCTGAATTGAAAACAGAGATTATATCTGGGCAGTTACTTTA
CCAAAAATGAGGAGAAATAGCCAGACATAAAATTCAAAATGATGTATGGTTGTGTGTGTA
TGTGGAATGGCACTAGTCTGGCTTTTCTGTGCAGTGTTTCTAAGCATCAAAAACGGTTCT
TCAAAGAGAATGCTGGTGTCTGATGACTAGTGTTGCTGGTTCCTCTCTAGCTCATCTCTA
GACCAAACAGAAACACACATCTTCTCTGCCAAGTATTCTGTGATGTCACAGGCAGGCCCT
CCAGCACTCAGGCGGCTTTTCCTTACGCTTTTCCTTTTCTGGCTGTAGGAGATTTAACCT
CTTCCCTCACTGTTTCTACCACGCCCCCTGACCCCTTTTCAGTTGGAGGATATATACTAT
TAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTAAAGATAACTCACCCAGATAGCATTTCTTTCATGATCTTTGAGCTTCCAAAAGAC
AATTCTAGTAAGTAGATCCTTGATGAAAAGTCAGTTGCGTGTGCATGAATGTGTGGACAA
CTTATGTCTCTGACATGTGAGACTTTTATTTGATGCTTGGGAAGACTTCCTCTCACATGG
GTTGAATCTGGTCTCTCTGTGCCTCCTCATATTCCACTCAGTGCAGTAATTATCACGGGA
TGTTAGCAGTGGTGTTTCTCATTAAATTTTAAAACTTAATTAGAACTTGATGTCTTTGAA
AGCTAATTTCTTATATTTAAAGTCCCAGATCCTGCTTTTATAACTGATTTTTGGCAAGCC
GGTTGCATGTGGCAGTACATTTGATGGCTGCTTTGGTCGGTTTGTCACTTTTGGGATTAG
CCAACAAGTCCCCTGATTCTCTGAATTGAAAACAGAGATTATATCTGGGCAGTTACTTTA
CCAAAAATGAGGAGAAATAGCCAGACATAAAATTCAAAATGATGTATGGTTGTGTGTGTA
TGTGGAATGGCACTAGTCTGGCTTTTCTGTGCAGTGTTTCTAAGCATCAAAAACGGTTCT
TCAAAGAGAATGCTGGTGTCTGATGACTAGTGTTGCTGGTTCCTCTCTAGCTCATCTCTA
GACCAAACAGAAACACACATCTTCTCTGCCAAGTATTCTGTGATGTCACAGGCAGGCCCT
CCAGCACTCAGGCGGCTTTTCCTTACGCTTTTCCTTTTCTGGCTGTAGGAGATTTAACCT
CTTCCCTCACTGTTTCTACCACGCCCCCTGACCCCTTTTCAGTTGGAGGATATATACTAT
TAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               436-554, - strand, RNAz p=0.66642
               

               
               712-843, + strand, RNAz p=0.986225

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               436-554, - strand, RNAz p=0.66642
               

               
               712-843, + strand, RNAz p=0.986225

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               317-843, gnl|bosTau2|chr2 (50530279-50529771)
               

               
               317-843, gnl|Hg17|chr2 (197977958-197977529)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               317-843, gnl|bosTau2|chr2 (50530279-50529771)
               

               
               317-843, gnl|Hg17|chr2 (197977958-197977529)

	436-554, - strand, RNAz p=0.66642
	712-843, + strand, RNAz p=0.986225

	317-843, gnl\|bosTau2\|chr2 (50530279-50529771)
	317-843, gnl\|Hg17\|chr2 (197977958-197977529)