Non-Coding RNA Search

LyN1-MLN01F010103

Sequence:


               
               TAAATGCCCTATTTCTGGACCACATCATGTTTGCTTGCTATTTTGATCCAGATGCCACAC
CGTAGCTTCATGCAGCCACGGGCTGATAATTTTAGGCATCGTGCACCGAAGTTAACCTTG
AAGAGTGCTGACCGGTGGACCTTCCTCAGTGACGAAATGTTCTATATCTGCTGTCCATTG
TGGCATCCACTAGCCACATGCTGCTGCCACGCCCTTGAAATACAGCTAGGGTGTTGCAGG
AATTGATTTTTTTTTTTTTTTTGGACTTTTAAATTTTATGTAATTTTAGTTCATTTAACT
TTAAATAGCCACATGGCTAATGACCATGTTAGACAGGATGGGTCTGGACAATGTAGGAAT
CCTCCAGGATGATGAGTTCCTCTGTGTTTGAGTCTCAGCGCTCCTTGTGCCATTTGGCCA
TTCTCTTGGAGAAAAACTACTTCTTGAGAAACCTTTTTTCTGGTGTTTAGACTATTTGGA
ATATGTAACTACTGGCAGAACAAAGTTCCTTCTAAATGTTGACGCATTTAAAGTTGTGAG
ATCTTAACCCTAAAAAATCAAAGTCACTAAGTTTTAGTTCACCATTCTTTTTTTTGGGGG
GGGGATGAGAGAATGATCGCATATGTCCTTGATTCTACCTTTAAGAGTCTGAGCCTTTAG
AAGATTTTTATTGGCAAGAGGTTTACTTCTTTAATTCTAAAAACAAAGAACTGTTTTCTT
TTACAGATACAAATCTGTTATTTGATGCCTGNCAAGTTCAGTGACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATGCCCTATTTCTGGACCACATCATGTTTGCTTGCTATTTTGATCCAGATGCCACAC
CGTAGCTTCATGCAGCCACGGGCTGATAATTTTAGGCATCGTGCACCGAAGTTAACCTTG
AAGAGTGCTGACCGGTGGACCTTCCTCAGTGACGAAATGTTCTATATCTGCTGTCCATTG
TGGCATCCACTAGCCACATGCTGCTGCCACGCCCTTGAAATACAGCTAGGGTGTTGCAGG
AATTGATTTTTTTTTTTTTTTTGGACTTTTAAATTTTATGTAATTTTAGTTCATTTAACT
TTAAATAGCCACATGGCTAATGACCATGTTAGACAGGATGGGTCTGGACAATGTAGGAAT
CCTCCAGGATGATGAGTTCCTCTGTGTTTGAGTCTCAGCGCTCCTTGTGCCATTTGGCCA
TTCTCTTGGAGAAAAACTACTTCTTGAGAAACCTTTTTTCTGGTGTTTAGACTATTTGGA
ATATGTAACTACTGGCAGAACAAAGTTCCTTCTAAATGTTGACGCATTTAAAGTTGTGAG
ATCTTAACCCTAAAAAATCAAAGTCACTAAGTTTTAGTTCACCATTCTTTTTTTTGGGGG
GGGGATGAGAGAATGATCGCATATGTCCTTGATTCTACCTTTAAGAGTCTGAGCCTTTAG
AAGATTTTTATTGGCAAGAGGTTTACTTCTTTAATTCTAAAAACAAAGAACTGTTTTCTT
TTACAGATACAAATCTGTTATTTGATGCCTGNCAAGTTCAGTGACACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               152-276, + strand, RNAz p=0.966808

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-276, + strand, RNAz p=0.966808

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-276, gnl|bosTau2|chr9 (18560876-18560598)
               

               
               1-276, gnl|Hg17|chr6 (116629704-116629982)
               

               
               1-276, gnl|Mm7|chr10 (34122881-34122598)
               


               
               546-767, gnl|bosTau2|chr9 (18559911-18559692)
               

               
               546-767, gnl|Hg17|chr6 (116630236-116630457)
               

               
               546-767, gnl|Mm7|chr10 (34122207-34122012)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-276, gnl|bosTau2|chr9 (18560876-18560598)
               

               
               1-276, gnl|Hg17|chr6 (116629704-116629982)
               

               
               1-276, gnl|Mm7|chr10 (34122881-34122598)
               


               
               546-767, gnl|bosTau2|chr9 (18559911-18559692)
               

               
               546-767, gnl|Hg17|chr6 (116630236-116630457)
               

               
               546-767, gnl|Mm7|chr10 (34122207-34122012)

	1-276, gnl\|bosTau2\|chr9 (18560876-18560598)
	1-276, gnl\|Hg17\|chr6 (116629704-116629982)
	1-276, gnl\|Mm7\|chr10 (34122881-34122598)

	546-767, gnl\|bosTau2\|chr9 (18559911-18559692)
	546-767, gnl\|Hg17\|chr6 (116630236-116630457)
	546-767, gnl\|Mm7\|chr10 (34122207-34122012)