Non-Coding RNA Search

LyN1-MLN01F060049

Sequence:


               
               TGTTGCCCGGCCCCTTTGTCGGGAGCTGTATTGCAGCCCCTCTGGCAAACACAGCAGTTC
GCACCGTTTTGTCAGGCTGAATGTGGAGTTTTTACATTTTAATGGGCTCTTCTGGCAGTG
ACCCATTGGCATGCAAAATGCTCCTTCTTGCTTCTTTTCTTTTTGCTATTAAAAAAAAAA
AACCCTACACTCCCAATCCCCTGGGTCGGGGTTGGGGGGGGACAGTGAACACGGCAGGAT
CAGGGTGTCAGACCCTGCTAATTGATTTGGTGTGTTTCCGTGTCCCCTCCCGCACACACC
TGTGCGCCCCATTTCTGCAGTACTCCCCCTTATCTTGAGGACAGTCTGAGTACAGGGAAT
CGCACATCTCAAGGGCTTCCTCTCTATGTCTCCAGTGCTTGCCGGATGCTGGTCCGTTCC
CCAAGAGATTTCGGCGATTTCCATCCCCCCTCTTGTACTGTCCCAGCCAGACTAAAGTAA
GTTTTCAGTTCCATTTCAAAGCCAAAATAACGTAATAAAAACCTCTGCAGAGGGCTCCTG
GAGCCCCGCTGGGTGTTCCTTTTAAGTCGCTTTCAAAGCCACCCTGAGTTCCTCCCCCAC
CCACAATTGCCCCTCATTTATCTCTGGGGAGTTTGTGCCAAGACTGTAAACATTCCTGGA
CTACCAGTTCCCCACGTTCCCTAGGAGGATGGCTGCCCTCTCCTATTTTTCTTAGCCCAG
AAATGCAAATCAAAAGGATGTCATANGGATGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGCCCGGCCCCTTTGTCGGGAGCTGTATTGCAGCCCCTCTGGCAAACACAGCAGTTC
GCACCGTTTTGTCAGGCTGAATGTGGAGTTTTTACATTTTAATGGGCTCTTCTGGCAGTG
ACCCATTGGCATGCAAAATGCTCCTTCTTGCTTCTTTTCTTTTTGCTATTAAAAAAAAAA
AACCCTACACTCCCAATCCCCTGGGTCGGGGTTGGGGGGGGACAGTGAACACGGCAGGAT
CAGGGTGTCAGACCCTGCTAATTGATTTGGTGTGTTTCCGTGTCCCCTCCCGCACACACC
TGTGCGCCCCATTTCTGCAGTACTCCCCCTTATCTTGAGGACAGTCTGAGTACAGGGAAT
CGCACATCTCAAGGGCTTCCTCTCTATGTCTCCAGTGCTTGCCGGATGCTGGTCCGTTCC
CCAAGAGATTTCGGCGATTTCCATCCCCCCTCTTGTACTGTCCCAGCCAGACTAAAGTAA
GTTTTCAGTTCCATTTCAAAGCCAAAATAACGTAATAAAAACCTCTGCAGAGGGCTCCTG
GAGCCCCGCTGGGTGTTCCTTTTAAGTCGCTTTCAAAGCCACCCTGAGTTCCTCCCCCAC
CCACAATTGCCCCTCATTTATCTCTGGGGAGTTTGTGCCAAGACTGTAAACATTCCTGGA
CTACCAGTTCCCCACGTTCCCTAGGAGGATGGCTGCCCTCTCCTATTTTTCTTAGCCCAG
AAATGCAAATCAAAAGGATGTCATANGGATGACAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-195, - strand, RNAz p=0.988462

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-195, - strand, RNAz p=0.988462

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               40-170, CJ011465 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ011465.1|), blast E-value=0, identity=100% 
               

               
               40-140, DB301245 BRALZ2 Homo sapiens cDNA clone BRALZ2014626 3', mRNA 
(dbj|DB301245.1|), blast E-value=1.99993e-41, identity=97.03% 
               

               
               40-140, DB367333 NT2RP3 Homo sapiens cDNA clone NT2RP3000186 3', mRNA 
(dbj|DB367333.1|), blast E-value=1.99993e-41, identity=97.03% 
               

               
               40-140, UI-H-BI2-ahp-g-01-0-UI.s1 NCI_CGAP_Sub4 Homo sapiens cDNA clone 
(gb|AW293808.1|), blast E-value=1.99993e-41, identity=97.03% 
               

               
               40-140, UI-E-EJ0-aig-c-14-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM677993.1|), blast E-value=1.99993e-41, identity=97.03% 
               

               
               40-140, UI-E-EJ0-aig-c-14-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM725879.1|), blast E-value=1.99993e-41, identity=97.03%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               40-170, CJ011465 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ011465.1|), blast E-value=0, identity=100% 
               

               
               40-140, DB301245 BRALZ2 Homo sapiens cDNA clone BRALZ2014626 3', mRNA 
(dbj|DB301245.1|), blast E-value=1.99993e-41, identity=97.03% 
               

               
               40-140, DB367333 NT2RP3 Homo sapiens cDNA clone NT2RP3000186 3', mRNA 
(dbj|DB367333.1|), blast E-value=1.99993e-41, identity=97.03% 
               

               
               40-140, UI-H-BI2-ahp-g-01-0-UI.s1 NCI_CGAP_Sub4 Homo sapiens cDNA clone 
(gb|AW293808.1|), blast E-value=1.99993e-41, identity=97.03% 
               

               
               40-140, UI-E-EJ0-aig-c-14-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM677993.1|), blast E-value=1.99993e-41, identity=97.03% 
               

               
               40-140, UI-E-EJ0-aig-c-14-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM725879.1|), blast E-value=1.99993e-41, identity=97.03%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-752, gnl|bosTau2|chr27 (21799266-21798544)
               

               
               1-752, gnl|Hg17|chr8 (38417437-38416699)
               

               
               1-752, gnl|Mm7|chr8 (24301589-24302270)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-752, gnl|bosTau2|chr27 (21799266-21798544)
               

               
               1-752, gnl|Hg17|chr8 (38417437-38416699)
               

               
               1-752, gnl|Mm7|chr8 (24301589-24302270)

	40-170, CJ011465 full-length enriched swine cDNA library, adult mesenteric (dbj\|CJ011465.1\|), blast E-value=0, identity=100%
	40-140, DB301245 BRALZ2 Homo sapiens cDNA clone BRALZ2014626 3', mRNA (dbj\|DB301245.1\|), blast E-value=1.99993e-41, identity=97.03%
	40-140, DB367333 NT2RP3 Homo sapiens cDNA clone NT2RP3000186 3', mRNA (dbj\|DB367333.1\|), blast E-value=1.99993e-41, identity=97.03%
	40-140, UI-H-BI2-ahp-g-01-0-UI.s1 NCI_CGAP_Sub4 Homo sapiens cDNA clone (gb\|AW293808.1\|), blast E-value=1.99993e-41, identity=97.03%
	40-140, UI-E-EJ0-aig-c-14-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM677993.1\|), blast E-value=1.99993e-41, identity=97.03%
	40-140, UI-E-EJ0-aig-c-14-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM725879.1\|), blast E-value=1.99993e-41, identity=97.03%

	1-752, gnl\|bosTau2\|chr27 (21799266-21798544)
	1-752, gnl\|Hg17\|chr8 (38417437-38416699)
	1-752, gnl\|Mm7\|chr8 (24301589-24302270)