Non-Coding RNA Search

LyN1-MLN01F120008

Sequence:


               
               AAATTCTTTCTGTGCATGAAGAAAGAGCCTCTAGACCTGAGTGGACTGCAGGGGACAGAT
TTCTTATATATTTGCACGCCTCTTCTTTCTCTCTGGGACATTCTGTAAGGCAAGCGCATG
GCCTCAGAAGTGCTGCCAGAAAGTGGTGCTCTGGATGGTAAAAGGGTCCTATTGGAACTT
AAGAGCAGAACGTTTGCCACGATTATGGAGTTCTTCCTGCTTTGGAGGCAGATGCAAAGA
GGAAACAGACGTGGGGGTTGGAGCTGCTCATGATGTATAATCCAAGGGGAAAAAAGCACC
TACGCAGAGGGCGCTGGCTGCGTGGGCATGAGCCTTGCTGCTGAAGTGGAAGCAGTCGGG
GGCAAAGAAAGAGCTGTCAGGCAACCCATCCTGGCGGAAGACAGGGGCCGTGTCACCGAG
ATGTCGGATAACACACATGATGCTCAGAAGCAACTGGGCGCTACCTGTGGCTCCCACTCA
TCCCCGAGGCCTTACCGGGGTCTTTGGCATGTCCACTTTCTCAAGGAACGGCTGCACGAC
CACTGTAAAATCTTCCCTCGTGTCGTAACGCCCACTCTCAACCAGCTGGTGAGTCCCCTC
CTGCAGGAGGAAGGGGGAGAGTGATCAGCAGGTGCTCTGCCCACGGTCCTTGTATGAACT
CTTTCTCCATCTTAGAATTAAGAAGAGTCTGACCTTCGAGGGAGATCAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTCTTTCTGTGCATGAAGAAAGAGCCTCTAGACCTGAGTGGACTGCAGGGGACAGAT
TTCTTATATATTTGCACGCCTCTTCTTTCTCTCTGGGACATTCTGTAAGGCAAGCGCATG
GCCTCAGAAGTGCTGCCAGAAAGTGGTGCTCTGGATGGTAAAAGGGTCCTATTGGAACTT
AAGAGCAGAACGTTTGCCACGATTATGGAGTTCTTCCTGCTTTGGAGGCAGATGCAAAGA
GGAAACAGACGTGGGGGTTGGAGCTGCTCATGATGTATAATCCAAGGGGAAAAAAGCACC
TACGCAGAGGGCGCTGGCTGCGTGGGCATGAGCCTTGCTGCTGAAGTGGAAGCAGTCGGG
GGCAAAGAAAGAGCTGTCAGGCAACCCATCCTGGCGGAAGACAGGGGCCGTGTCACCGAG
ATGTCGGATAACACACATGATGCTCAGAAGCAACTGGGCGCTACCTGTGGCTCCCACTCA
TCCCCGAGGCCTTACCGGGGTCTTTGGCATGTCCACTTTCTCAAGGAACGGCTGCACGAC
CACTGTAAAATCTTCCCTCGTGTCGTAACGCCCACTCTCAACCAGCTGGTGAGTCCCCTC
CTGCAGGAGGAAGGGGGAGAGTGATCAGCAGGTGCTCTGCCCACGGTCCTTGTATGAACT
CTTTCTCCATCTTAGAATTAAGAAGAGTCTGACCTTCGAGGGAGATCAATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               305-416, + strand, RNAz p=0.976388

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-416, + strand, RNAz p=0.976388

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-292, gnl|bosTau2|chr11 (59322611-59322327)
               

               
               1-292, gnl|Hg17|chr2 (28727851-28727553)
               

               
               1-292, gnl|Mm7|chr5 (31353476-31353186)
               


               
               305-711, gnl|bosTau2|chr11 (59318933-59318515)
               

               
               305-711, gnl|Hg17|chr2 (28724278-28723850)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-292, gnl|bosTau2|chr11 (59322611-59322327)
               

               
               1-292, gnl|Hg17|chr2 (28727851-28727553)
               

               
               1-292, gnl|Mm7|chr5 (31353476-31353186)
               


               
               305-711, gnl|bosTau2|chr11 (59318933-59318515)
               

               
               305-711, gnl|Hg17|chr2 (28724278-28723850)

	1-292, gnl\|bosTau2\|chr11 (59322611-59322327)
	1-292, gnl\|Hg17\|chr2 (28727851-28727553)
	1-292, gnl\|Mm7\|chr5 (31353476-31353186)

	305-711, gnl\|bosTau2\|chr11 (59318933-59318515)
	305-711, gnl\|Hg17\|chr2 (28724278-28723850)