Non-Coding RNA Search

LyN1-MLN01G010029

Sequence:


               
               AGTTATTAGTGAAGTTAGTGCAGTGGGATGATGTGTAAATGATGCCATCCTTTTATCTCC
AGAGGCATTTCCAGCTACATTTGGACAGTTGCTAGAGGCTAGCAACTCCTGTGATTGTAT
GACGTGAGAAATACTTggagatcccgttgtggtgcagtggtaacaaatccggccagtatc
ctgaggatgtggattcgatccctggcctcactccgtgggttcaggatctggcattgccat
gagctgtggtgtagttcacatatgcggcttggatctggcattgctgtggctgtggcatag
tctggcagttacagttctaattcaacccctagcttgggaacttccatatgccatgggtgc
agccctAAAAAGCAAAATGAACAAACACAACAAAAAAGAAATACTTATATGGTACCTTGC
AGTATAATGATTTGAAAATGCATGTCTGATAAAGATGTGCTTTCAATTAATTATCCTCCA
TTTCAGATGAAAACATTGGGGGTCATTTTCTAGATAATTCAAGAAATTTTTAAGTATTTT
TCTTCTTCATTGGAAGGCAGCCAAATACCGTAACCTAAGTCTTTGAAGTCTCCATTTCAG
AAGACCGTCCATCTCCCTGGTGTAGTTAAAAGAAATACAGAGTGATTCCAGCTTGAGCTG
ATCCTGTGGACCAGGTGCATGTATGCTGCCCTGGGCCTTCTGATCACAAGCACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTATTAGTGAAGTTAGTGCAGTGGGATGATGTGTAAATGATGCCATCCTTTTATCTCC
AGAGGCATTTCCAGCTACATTTGGACAGTTGCTAGAGGCTAGCAACTCCTGTGATTGTAT
GACGTGAGAAATACTTggagatcccgttgtggtgcagtggtaacaaatccggccagtatc
ctgaggatgtggattcgatccctggcctcactccgtgggttcaggatctggcattgccat
gagctgtggtgtagttcacatatgcggcttggatctggcattgctgtggctgtggcatag
tctggcagttacagttctaattcaacccctagcttgggaacttccatatgccatgggtgc
agccctAAAAAGCAAAATGAACAAACACAACAAAAAAGAAATACTTATATGGTACCTTGC
AGTATAATGATTTGAAAATGCATGTCTGATAAAGATGTGCTTTCAATTAATTATCCTCCA
TTTCAGATGAAAACATTGGGGGTCATTTTCTAGATAATTCAAGAAATTTTTAAGTATTTT
TCTTCTTCATTGGAAGGCAGCCAAATACCGTAACCTAAGTCTTTGAAGTCTCCATTTCAG
AAGACCGTCCATCTCCCTGGTGTAGTTAAAAGAAATACAGAGTGATTCCAGCTTGAGCTG
ATCCTGTGGACCAGGTGCATGTATGCTGCCCTGGGCCTTCTGATCACAAGCACTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               3-121, + strand, RNAz p=0.566067

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, + strand, RNAz p=0.566067

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-161, gnl|bosTau2|chr4 (29775554-29775709)
               

               
               3-161, gnl|canFam2|chr14 (53874918-53875477)
               

               
               3-161, gnl|dasNov1|scaffold_107 (214885-215438)
               

               
               3-161, gnl|echTel1|scaffold_324708 (141303-141869)
               

               
               3-161, gnl|hg17|chr7 (110347569-110348112)
               

               
               3-161, gnl|Hg17|chr7 (110347876-110347736)
               

               
               3-161, gnl|loxAfr1|scaffold_83761 (34227-33659)
               

               
               3-161, gnl|monDom2|scaffold_22 (39724531-39723977)
               

               
               3-161, gnl|oryCun1|scaffold_184544 (75729-75168)
               

               
               3-161, gnl|panTro1|chr6 (112298987-112299530)
               

               
               3-161, gnl|rheMac2|chr3 (148531918-148532480)
               


               
               397-714, gnl|bosTau2|chr4 (29775675-29775986)
               

               
               397-714, gnl|Hg17|chr7 (110347770-110347450)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-161, gnl|bosTau2|chr4 (29775554-29775709)
               

               
               3-161, gnl|canFam2|chr14 (53874918-53875477)
               

               
               3-161, gnl|dasNov1|scaffold_107 (214885-215438)
               

               
               3-161, gnl|echTel1|scaffold_324708 (141303-141869)
               

               
               3-161, gnl|hg17|chr7 (110347569-110348112)
               

               
               3-161, gnl|Hg17|chr7 (110347876-110347736)
               

               
               3-161, gnl|loxAfr1|scaffold_83761 (34227-33659)
               

               
               3-161, gnl|monDom2|scaffold_22 (39724531-39723977)
               

               
               3-161, gnl|oryCun1|scaffold_184544 (75729-75168)
               

               
               3-161, gnl|panTro1|chr6 (112298987-112299530)
               

               
               3-161, gnl|rheMac2|chr3 (148531918-148532480)
               


               
               397-714, gnl|bosTau2|chr4 (29775675-29775986)
               

               
               397-714, gnl|Hg17|chr7 (110347770-110347450)

	3-161, gnl\|bosTau2\|chr4 (29775554-29775709)
	3-161, gnl\|canFam2\|chr14 (53874918-53875477)
	3-161, gnl\|dasNov1\|scaffold_107 (214885-215438)
	3-161, gnl\|echTel1\|scaffold_324708 (141303-141869)
	3-161, gnl\|hg17\|chr7 (110347569-110348112)
	3-161, gnl\|Hg17\|chr7 (110347876-110347736)
	3-161, gnl\|loxAfr1\|scaffold_83761 (34227-33659)
	3-161, gnl\|monDom2\|scaffold_22 (39724531-39723977)
	3-161, gnl\|oryCun1\|scaffold_184544 (75729-75168)
	3-161, gnl\|panTro1\|chr6 (112298987-112299530)
	3-161, gnl\|rheMac2\|chr3 (148531918-148532480)

	397-714, gnl\|bosTau2\|chr4 (29775675-29775986)
	397-714, gnl\|Hg17\|chr7 (110347770-110347450)