Non-Coding RNA Search

LyN1-MLN01G010082

Sequence:


               
               TGACAACTTCTGCACAAAACAGTACTTACATCTATTAGGGGGCATCTGAGCATGCCAGGT
TAGCCAGGTGAGAGCCGTCAAGAAAATATATGTCCAAAGCAGCAGAGTTAATAACTGCTG
ACTGAGGTTCCGCCGCATGCCCTTGCTGCCAGAGAGCCTGGGTTTCTGAAGTGTGTGATA
TTATCGTAACCATGGGGATTTTGCAAGGACTGCAGGATGGTTTTGAGAGCTGGGGCAAGG
GTCAGGCAGGCAGGGTGGAGAGGTTTGGGGCTAAATAAGATGTTTTAAACCCCCAAGAGA
GATGGAGGAGGCAGGTAGGGCCTGCTAGATGAGGTTCCTAGTTTAGAAAAAAAAAATGAA
ATATACCAGAGTTGGAGGCCTGAGAGGAGATGAGCACTGCAAGAGGGAGAGTAAACACAG
CCCAGGGACCCTTCCTCCTGTCCTTCTCTCTGCCTGATGGCTCTCCCACCACATCCGCTG
GAGAACACCCAAGTCAGGCCATTCGTCCTGCCAGTCATGCCTCACCCTCGTCCCAGTGCC
ATTTTTCCTGAACAACCATCATCCTCCTGCTCCTGCTCTTGCCAACCTGTTCTCTCTCAG
CCCAGTGACAGTGCTCTTTATGGAACAAAGGTCTATTCTGTCCCATCCATGCTTGAAAGC
CCATGCCCTTATAGCACACAGCAGCCACCGACATGGCTTAGAAGGCCCCTGGCAGTGTAG
GGCCACCTGCCTTACGGGCTTCACGCCACCCCACTGTCATCCCCACTCACTGCTGCTGCG
TCCAGCCACACAGTCCCTTCAGGTCCTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACAACTTCTGCACAAAACAGTACTTACATCTATTAGGGGGCATCTGAGCATGCCAGGT
TAGCCAGGTGAGAGCCGTCAAGAAAATATATGTCCAAAGCAGCAGAGTTAATAACTGCTG
ACTGAGGTTCCGCCGCATGCCCTTGCTGCCAGAGAGCCTGGGTTTCTGAAGTGTGTGATA
TTATCGTAACCATGGGGATTTTGCAAGGACTGCAGGATGGTTTTGAGAGCTGGGGCAAGG
GTCAGGCAGGCAGGGTGGAGAGGTTTGGGGCTAAATAAGATGTTTTAAACCCCCAAGAGA
GATGGAGGAGGCAGGTAGGGCCTGCTAGATGAGGTTCCTAGTTTAGAAAAAAAAAATGAA
ATATACCAGAGTTGGAGGCCTGAGAGGAGATGAGCACTGCAAGAGGGAGAGTAAACACAG
CCCAGGGACCCTTCCTCCTGTCCTTCTCTCTGCCTGATGGCTCTCCCACCACATCCGCTG
GAGAACACCCAAGTCAGGCCATTCGTCCTGCCAGTCATGCCTCACCCTCGTCCCAGTGCC
ATTTTTCCTGAACAACCATCATCCTCCTGCTCCTGCTCTTGCCAACCTGTTCTCTCTCAG
CCCAGTGACAGTGCTCTTTATGGAACAAAGGTCTATTCTGTCCCATCCATGCTTGAAAGC
CCATGCCCTTATAGCACACAGCAGCCACCGACATGGCTTAGAAGGCCCCTGGCAGTGTAG
GGCCACCTGCCTTACGGGCTTCACGCCACCCCACTGTCATCCCCACTCACTGCTGCTGCG
TCCAGCCACACAGTCCCTTCAGGTCCTTTGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               41-160, - strand, RNAz p=0.653651
               

               
               240-355, - strand, RNAz p=0.861425
               

               
               653-809, - strand, RNAz p=0.983052

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.653651
               

               
               240-355, - strand, RNAz p=0.861425
               

               
               653-809, - strand, RNAz p=0.983052

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-809, gnl|bosTau2|chr16 (44809207-44808393)
               

               
               1-809, gnl|Hg17|chr1 (171869037-171868227)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-809, gnl|bosTau2|chr16 (44809207-44808393)
               

               
               1-809, gnl|Hg17|chr1 (171869037-171868227)

	41-160, - strand, RNAz p=0.653651
	240-355, - strand, RNAz p=0.861425
	653-809, - strand, RNAz p=0.983052

	1-809, gnl\|bosTau2\|chr16 (44809207-44808393)
	1-809, gnl\|Hg17\|chr1 (171869037-171868227)