LyN1-MLN01G070027
|
GCTGGcacacacacacacacacacgcacgcacgcatgcacacacacacCCCACACAGACG
CGGCCCGTGGCCACGGGCCTGGGAGGGTCCAGGTCTGCCCTATGTAACTGCTGCACCTTG
AAGAACACGCAGCCCAAAGGAAGACATCGCCCTCCACGTCCAAGAAGGGAGAGACCGTGT
ATCTTCCTGCTGAGGCGTTGAGAGTAAAACCTATTGAGCAAGTGACGAGCCCCTTAATAA
GTGCCTGCTCTTCGTCCATCATCCGTTCCAGCACCCGTGGATTCCTGGAGCAGACACTTC
ATGAAGCGCTTTTCTCTGTGACGGCAGGAAAGTTACCTCCTCCCTTCGCAGGCTCTTCAG
GGAGCCGGGCTTTGGCTCCCTGGAGCTTTTGACCCTGTGGAGGAGACAGGACACGAATGC
TGTGGGGGCAGGAGGGGGAGTCAGGGGTGCTGGAAGGAGCTGGAAAAAGAAGCCAGGCTG
AGGGGGAAACCCAGACGGGTGTCGCATAGAGGCTGCCTTAAAACCCCGTCTCCGATTTTA
AGGTGCCCGTCATGTACAAGCCAGTACGTCCACTGCCAGACCTGGATGTGAGACGGTTCA
GCCCAGATTTGAGAAACAAAAGACTGGAAACCCCCAGAGTGTTCATTAAGAAGAGAATGG
TAAATAAATGATTGTCTCTTTCAACAATGGGATCTTATGAACTTGTGAAAAAAGACTCAA
GTGGATCTCTATACGGTGACATGGAAAGATCTCAAAGCTCTTTTGTTGAGTGAAAAATAC
T
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTGGcacacacacacacacacacgcacgcacgcatgcacacacacacCCCACACAGACG
CGGCCCGTGGCCACGGGCCTGGGAGGGTCCAGGTCTGCCCTATGTAACTGCTGCACCTTG
AAGAACACGCAGCCCAAAGGAAGACATCGCCCTCCACGTCCAAGAAGGGAGAGACCGTGT
ATCTTCCTGCTGAGGCGTTGAGAGTAAAACCTATTGAGCAAGTGACGAGCCCCTTAATAA
GTGCCTGCTCTTCGTCCATCATCCGTTCCAGCACCCGTGGATTCCTGGAGCAGACACTTC
ATGAAGCGCTTTTCTCTGTGACGGCAGGAAAGTTACCTCCTCCCTTCGCAGGCTCTTCAG
GGAGCCGGGCTTTGGCTCCCTGGAGCTTTTGACCCTGTGGAGGAGACAGGACACGAATGC
TGTGGGGGCAGGAGGGGGAGTCAGGGGTGCTGGAAGGAGCTGGAAAAAGAAGCCAGGCTG
AGGGGGAAACCCAGACGGGTGTCGCATAGAGGCTGCCTTAAAACCCCGTCTCCGATTTTA
AGGTGCCCGTCATGTACAAGCCAGTACGTCCACTGCCAGACCTGGATGTGAGACGGTTCA
GCCCAGATTTGAGAAACAAAAGACTGGAAACCCCCAGAGTGTTCATTAAGAAGAGAATGG
TAAATAAATGATTGTCTCTTTCAACAATGGGATCTTATGAACTTGTGAAAAAAGACTCAA
GTGGATCTCTATACGGTGACATGGAAAGATCTCAAAGCTCTTTTGTTGAGTGAAAAATAC
T
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
51-781, gnl|bosTau2|chr18 (6638636-6639394) |
|
51-781, gnl|canFam2|chr5 (74308015-74306845) |
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51-781, gnl|dasNov1|scaffold_6420 (33785-32724) |
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51-781, gnl|hg17|chr16 (78977418-78978581) |
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51-781, gnl|Hg17|chr16 (78978792-78977994) |
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51-781, gnl|loxAfr1|scaffold_5796 (32341-31141) |
|
51-781, gnl|oryCun1|scaffold_204115 (23465-22413) |
|
51-781, gnl|panTro1|chr18 (73841000-73842163) |
|
51-781, gnl|rheMac2|chr20 (78540667-78541829) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
51-781, gnl|bosTau2|chr18 (6638636-6639394) |
|
51-781, gnl|canFam2|chr5 (74308015-74306845) |
|
51-781, gnl|dasNov1|scaffold_6420 (33785-32724) |
|
51-781, gnl|hg17|chr16 (78977418-78978581) |
|
51-781, gnl|Hg17|chr16 (78978792-78977994) |
|
51-781, gnl|loxAfr1|scaffold_5796 (32341-31141) |
|
51-781, gnl|oryCun1|scaffold_204115 (23465-22413) |
|
51-781, gnl|panTro1|chr18 (73841000-73842163) |
|
51-781, gnl|rheMac2|chr20 (78540667-78541829) |
