Non-Coding RNA Search

LyN1-MLN01G090092

Sequence:


               
               ATTTGTTAAGATTCTTACACCCGGAGAGCTGTTTTCCTCCTTGCCTAATGGGCTGATATA
AAGGAAGCTGAGACAGAGAAAACTGCAGTGGAGCAGTAAATAAAGTCAGAATTTTAGTTT
TTCAGATTGACTGCAAAGCTTAGCAGCATTTATTTGTGTTTCTAAACCAGAGGCAAGACA
ATGCATTATGTCACCAGGAGATCTGATGTTTTATGGTGAATGGTAAGCTGATAACTCTCT
CTCTTTACTCTCTCTCTTTACTTTGATAATAATAGTAACAGACTATAGCAAGGGGAGGAA
GGCCCTTTGGAGGAGACCCCTTCTCTGTGTGCCTTTTTTTTTTTTTTTTTTCTTTTTAGG
GCTGTACCTGCAGCAAGTGGAAGTgcttgtagcaacaccaaatccttaacccattgagcg
aggtcagggattgaacctgcatcttcacgggcaccatttcaggtttttaacccgctgagc
cataacaggcactccTTCCATGAGGCTTCTAATGCATGGCTCCCCTGAGCGGGGGGTCCC
CAGGCTCTTTTACTGCTGGTGGAGAGCATTGGTTTCTGTAGTGGAGAAGTTGACCCTGAC
CTGCCCCATCTAAATAGGCTCCTCACTGAGAAAGTGACCATGAAAGAAGGAATGAGACCT
CTGGCCCAGAGTGGGAAGCCACTTGCTGACTAGTGACCATGTGAACCAGAAGTCTGCTTT
CTAGAAGCCCACAGCCTCTAGGTCATGATTTACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGTTAAGATTCTTACACCCGGAGAGCTGTTTTCCTCCTTGCCTAATGGGCTGATATA
AAGGAAGCTGAGACAGAGAAAACTGCAGTGGAGCAGTAAATAAAGTCAGAATTTTAGTTT
TTCAGATTGACTGCAAAGCTTAGCAGCATTTATTTGTGTTTCTAAACCAGAGGCAAGACA
ATGCATTATGTCACCAGGAGATCTGATGTTTTATGGTGAATGGTAAGCTGATAACTCTCT
CTCTTTACTCTCTCTCTTTACTTTGATAATAATAGTAACAGACTATAGCAAGGGGAGGAA
GGCCCTTTGGAGGAGACCCCTTCTCTGTGTGCCTTTTTTTTTTTTTTTTTTCTTTTTAGG
GCTGTACCTGCAGCAAGTGGAAGTgcttgtagcaacaccaaatccttaacccattgagcg
aggtcagggattgaacctgcatcttcacgggcaccatttcaggtttttaacccgctgagc
cataacaggcactccTTCCATGAGGCTTCTAATGCATGGCTCCCCTGAGCGGGGGGTCCC
CAGGCTCTTTTACTGCTGGTGGAGAGCATTGGTTTCTGTAGTGGAGAAGTTGACCCTGAC
CTGCCCCATCTAAATAGGCTCCTCACTGAGAAAGTGACCATGAAAGAAGGAATGAGACCT
CTGGCCCAGAGTGGGAAGCCACTTGCTGACTAGTGACCATGTGAACCAGAAGTCTGCTTT
CTAGAAGCCCACAGCCTCTAGGTCATGATTTACGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               117-214, - strand, RNAz p=0.782464
               

               
               530-626, - strand, RNAz p=0.760451

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-214, - strand, RNAz p=0.782464
               

               
               530-626, - strand, RNAz p=0.760451

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-249, gnl|bosTau2|chr4 (49054050-49054316)
               

               
               1-249, gnl|Hg17|chr7 (129252093-129251856)
               


               
               512-648, gnl|bosTau2|chr4 (49054376-49054508)
               

               
               512-648, gnl|canFam2|chr14 (9805609-9805227)
               

               
               512-648, gnl|dasNov1|scaffold_10821 (12543-12115)
               

               
               512-648, gnl|hg17|chr7 (129251522-129251909)
               

               
               512-648, gnl|Hg17|chr7 (129251781-129251653)
               

               
               512-648, gnl|loxAfr1|scaffold_10029 (54053-53638)
               

               
               512-648, gnl|panTro1|chr6 (131719690-131720077)
               

               
               512-648, gnl|rheMac2|chr3 (167389329-167389718)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-249, gnl|bosTau2|chr4 (49054050-49054316)
               

               
               1-249, gnl|Hg17|chr7 (129252093-129251856)
               


               
               512-648, gnl|bosTau2|chr4 (49054376-49054508)
               

               
               512-648, gnl|canFam2|chr14 (9805609-9805227)
               

               
               512-648, gnl|dasNov1|scaffold_10821 (12543-12115)
               

               
               512-648, gnl|hg17|chr7 (129251522-129251909)
               

               
               512-648, gnl|Hg17|chr7 (129251781-129251653)
               

               
               512-648, gnl|loxAfr1|scaffold_10029 (54053-53638)
               

               
               512-648, gnl|panTro1|chr6 (131719690-131720077)
               

               
               512-648, gnl|rheMac2|chr3 (167389329-167389718)

	117-214, - strand, RNAz p=0.782464
	530-626, - strand, RNAz p=0.760451

	1-249, gnl\|bosTau2\|chr4 (49054050-49054316)
	1-249, gnl\|Hg17\|chr7 (129252093-129251856)

	512-648, gnl\|bosTau2\|chr4 (49054376-49054508)
	512-648, gnl\|canFam2\|chr14 (9805609-9805227)
	512-648, gnl\|dasNov1\|scaffold_10821 (12543-12115)
	512-648, gnl\|hg17\|chr7 (129251522-129251909)
	512-648, gnl\|Hg17\|chr7 (129251781-129251653)
	512-648, gnl\|loxAfr1\|scaffold_10029 (54053-53638)
	512-648, gnl\|panTro1\|chr6 (131719690-131720077)
	512-648, gnl\|rheMac2\|chr3 (167389329-167389718)