Non-Coding RNA Search

LyN1-MLN01G100004

Sequence:


               
               CGAGTCGGCGTTGGCCTACTGGTTGCTTCTGTGATGAGATCAAATAAACATGGGTTTGCA
TTTCATATTCACTTCTCATGAGCTCTATGACTTTGAGTAAGTTATTTAACCTTTCTGTAC
CACATCTTCCTCACACTGTGGAATGGGTTAGAGATACTGTATGTAAAGCGCCATGCTTGG
GATCCTAAAACATGGTAACTTCTATTTTTATCTGTTGCTAGTACATTAGAAGTTGTTATA
AAGTTCATGCTTTTTTAGTTCCTAAGAGGTTGATCAGTTTTGTTTAATGTGCATCCCACC
CTCGTCCTGTTTCTTTTCTTTTCTTTTTTTCCTATAGGGTGAACTGTCCCTTGATCAAGA
TGTGGTAGAGTATATCATGAATCAGCCAAATGTGGTTCCACGAATCAACTCAAGGATTTT
GACAGCTGAGCGCGAATACCTGGACTTAACAGCAACCAGTAAGGAGTGTTTCAGGAACAA
CTCTGGGCTTTTTTGGTCTGTCTTTGAGAATCTTTGCATTTATTGGATTGTAATGTTCAG
AATATAACCCGTGATTGTGACAAAGTTTTGTGTAAGCTCATTGCATCTTCAGTTCATTAT
ATGAGCTTCTAAATTCACAAGAGTTTCCTCTGAAAGGAGAGAAACTCTTCCTTTGACAAA
TCTTTGTAAACTCTGAAAGGTATTCAGTGCTTTTCAAATGCTAACTAACCTTAAGCCTTA
GATGGTCAGAATGGACCTGGATTGTTGTCTAAAATCAGTCAGCAATACTGTTGATAAATA
TCTCAAGTAACTTTACTCTGAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGTCGGCGTTGGCCTACTGGTTGCTTCTGTGATGAGATCAAATAAACATGGGTTTGCA
TTTCATATTCACTTCTCATGAGCTCTATGACTTTGAGTAAGTTATTTAACCTTTCTGTAC
CACATCTTCCTCACACTGTGGAATGGGTTAGAGATACTGTATGTAAAGCGCCATGCTTGG
GATCCTAAAACATGGTAACTTCTATTTTTATCTGTTGCTAGTACATTAGAAGTTGTTATA
AAGTTCATGCTTTTTTAGTTCCTAAGAGGTTGATCAGTTTTGTTTAATGTGCATCCCACC
CTCGTCCTGTTTCTTTTCTTTTCTTTTTTTCCTATAGGGTGAACTGTCCCTTGATCAAGA
TGTGGTAGAGTATATCATGAATCAGCCAAATGTGGTTCCACGAATCAACTCAAGGATTTT
GACAGCTGAGCGCGAATACCTGGACTTAACAGCAACCAGTAAGGAGTGTTTCAGGAACAA
CTCTGGGCTTTTTTGGTCTGTCTTTGAGAATCTTTGCATTTATTGGATTGTAATGTTCAG
AATATAACCCGTGATTGTGACAAAGTTTTGTGTAAGCTCATTGCATCTTCAGTTCATTAT
ATGAGCTTCTAAATTCACAAGAGTTTCCTCTGAAAGGAGAGAAACTCTTCCTTTGACAAA
TCTTTGTAAACTCTGAAAGGTATTCAGTGCTTTTCAAATGCTAACTAACCTTAAGCCTTA
GATGGTCAGAATGGACCTGGATTGTTGTCTAAAATCAGTCAGCAATACTGTTGATAAATA
TCTCAAGTAACTTTACTCTGAGAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               569-728, - strand, RNAz p=0.987609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               569-728, - strand, RNAz p=0.987609

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               20-180, gnl|bosTau2|chr2 (1847696-1847855)
               

               
               20-180, gnl|Hg17|chr2 (128626227-128626430)
               


               
               274-750, gnl|bosTau2|chr2 (1848212-1848674)
               

               
               274-750, gnl|Hg17|chr2 (128626539-128627020)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-180, gnl|bosTau2|chr2 (1847696-1847855)
               

               
               20-180, gnl|Hg17|chr2 (128626227-128626430)
               


               
               274-750, gnl|bosTau2|chr2 (1848212-1848674)
               

               
               274-750, gnl|Hg17|chr2 (128626539-128627020)

	20-180, gnl\|bosTau2\|chr2 (1847696-1847855)
	20-180, gnl\|Hg17\|chr2 (128626227-128626430)

	274-750, gnl\|bosTau2\|chr2 (1848212-1848674)
	274-750, gnl\|Hg17\|chr2 (128626539-128627020)