Non-Coding RNA Search

LyN1-MLN01G110019

Sequence:


               
               ACAAAGCAGCAAAGAATTCAACCCAGGCAACTTCCCTCACCCTGTTCAGCTGAGGGCTGG
GCAAGCCATAATGAAAAAGGGGCAGTTGCTTCCACATAGAGGTCCTGAGACAAGTGTCTC
CATGTCCAGGAGACAGGGATGCCTGCCTAAATTCTTCATTTACCGCCGCTGCCATCCTTC
CTCTGTCACATCCAGTGGACACTTGACCCATTGCCCCACGGTGCCCAGAAGCAGTTGCAC
ACAGAAGTGGAGTGTCTGTGACAGCCCTGCCTGGGTGGGAGTTGGGGGCAGGCAGGGGAA
GGCACCCCAGGAAGCCCTCCTGGAGAAGCCTGAGTTTAAAGAAAGCCCAATTTCCCAGGA
AATTGGAAACAGATATTACTTACTCATTTTAATGAAGAGACGTTGATTGTGAACCAGTGC
CCATTGATGGCCTGAACAGAGGTCAGGGCTATGTGGGAAATCTGGGCACATTTCCATTTA
AGCATTTAGACATTATACACCTGAAAGTCAAATCTGAGTCCAGGGACAAGATCAGCCTTA
GTGAGGGCATCTGGGTATCCTAGGATGAAATTATGCCACGAAGAACACTGGCTTCAATGG
GATATGTGGGAGACTGGATGACTGGAAGCAAAGTTGGAGAAGGGGACATTTCAAGGAATG
GTGTGTTGAGTGACCTTCTGAGTGGCTACTGTCCCACAGCCTATAGCAGAGAAGTGGAAG
AAGGCCTGTGATCCTTCTCCCAGGAAAGTCTTCTCCCTGATGAGTAGAAAAATTACTTTT
CAATTGCAGAATATGCTCTTGCTTCAAAATCCCTCTGCTCTCCCCACGTCCTGCATCCTC
CCACAGCTCCATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAAGCAGCAAAGAATTCAACCCAGGCAACTTCCCTCACCCTGTTCAGCTGAGGGCTGG
GCAAGCCATAATGAAAAAGGGGCAGTTGCTTCCACATAGAGGTCCTGAGACAAGTGTCTC
CATGTCCAGGAGACAGGGATGCCTGCCTAAATTCTTCATTTACCGCCGCTGCCATCCTTC
CTCTGTCACATCCAGTGGACACTTGACCCATTGCCCCACGGTGCCCAGAAGCAGTTGCAC
ACAGAAGTGGAGTGTCTGTGACAGCCCTGCCTGGGTGGGAGTTGGGGGCAGGCAGGGGAA
GGCACCCCAGGAAGCCCTCCTGGAGAAGCCTGAGTTTAAAGAAAGCCCAATTTCCCAGGA
AATTGGAAACAGATATTACTTACTCATTTTAATGAAGAGACGTTGATTGTGAACCAGTGC
CCATTGATGGCCTGAACAGAGGTCAGGGCTATGTGGGAAATCTGGGCACATTTCCATTTA
AGCATTTAGACATTATACACCTGAAAGTCAAATCTGAGTCCAGGGACAAGATCAGCCTTA
GTGAGGGCATCTGGGTATCCTAGGATGAAATTATGCCACGAAGAACACTGGCTTCAATGG
GATATGTGGGAGACTGGATGACTGGAAGCAAAGTTGGAGAAGGGGACATTTCAAGGAATG
GTGTGTTGAGTGACCTTCTGAGTGGCTACTGTCCCACAGCCTATAGCAGAGAAGTGGAAG
AAGGCCTGTGATCCTTCTCCCAGGAAAGTCTTCTCCCTGATGAGTAGAAAAATTACTTTT
CAATTGCAGAATATGCTCTTGCTTCAAAATCCCTCTGCTCTCCCCACGTCCTGCATCCTC
CCACAGCTCCATAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               45-151, - strand, RNAz p=0.619647

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-151, - strand, RNAz p=0.619647

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-852, gnl|bosTau2|chr24 (35194472-35193649)
               

               
               1-852, gnl|canFam2|chr1 (23554316-23553480)
               

               
               1-852, gnl|dasNov1|scaffold_4013 (52756-51918)
               

               
               1-852, gnl|echTel1|scaffold_324101 (159063-159838)
               

               
               1-852, gnl|hg17|chr18 (50887885-50888711)
               

               
               1-852, gnl|Hg17|chr18 (50888104-50888931)
               

               
               1-852, gnl|loxAfr1|scaffold_2622 (65392-66247)
               

               
               1-852, gnl|mm7|chr18 (70215205-70214413)
               

               
               1-852, gnl|Mm7|chr18 (70214974-70214152)
               

               
               1-852, gnl|monDom2|scaffold_20 (48265768-48265008)
               

               
               1-852, gnl|oryCun1|scaffold_213493 (134127-134963)
               

               
               1-852, gnl|panTro1|chr17 (47516258-47517087)
               

               
               1-852, gnl|rheMac2|chr18 (48343057-48343885)
               

               
               1-852, gnl|rn3|chr18 (66584127-66583276)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr24 (35194472-35193649)
               

               
               1-852, gnl|canFam2|chr1 (23554316-23553480)
               

               
               1-852, gnl|dasNov1|scaffold_4013 (52756-51918)
               

               
               1-852, gnl|echTel1|scaffold_324101 (159063-159838)
               

               
               1-852, gnl|hg17|chr18 (50887885-50888711)
               

               
               1-852, gnl|Hg17|chr18 (50888104-50888931)
               

               
               1-852, gnl|loxAfr1|scaffold_2622 (65392-66247)
               

               
               1-852, gnl|mm7|chr18 (70215205-70214413)
               

               
               1-852, gnl|Mm7|chr18 (70214974-70214152)
               

               
               1-852, gnl|monDom2|scaffold_20 (48265768-48265008)
               

               
               1-852, gnl|oryCun1|scaffold_213493 (134127-134963)
               

               
               1-852, gnl|panTro1|chr17 (47516258-47517087)
               

               
               1-852, gnl|rheMac2|chr18 (48343057-48343885)
               

               
               1-852, gnl|rn3|chr18 (66584127-66583276)

	1-852, gnl\|bosTau2\|chr24 (35194472-35193649)
	1-852, gnl\|canFam2\|chr1 (23554316-23553480)
	1-852, gnl\|dasNov1\|scaffold_4013 (52756-51918)
	1-852, gnl\|echTel1\|scaffold_324101 (159063-159838)
	1-852, gnl\|hg17\|chr18 (50887885-50888711)
	1-852, gnl\|Hg17\|chr18 (50888104-50888931)
	1-852, gnl\|loxAfr1\|scaffold_2622 (65392-66247)
	1-852, gnl\|mm7\|chr18 (70215205-70214413)
	1-852, gnl\|Mm7\|chr18 (70214974-70214152)
	1-852, gnl\|monDom2\|scaffold_20 (48265768-48265008)
	1-852, gnl\|oryCun1\|scaffold_213493 (134127-134963)
	1-852, gnl\|panTro1\|chr17 (47516258-47517087)
	1-852, gnl\|rheMac2\|chr18 (48343057-48343885)
	1-852, gnl\|rn3\|chr18 (66584127-66583276)