Non-Coding RNA Search

LyN2-AR032G12LN05FG12S

Sequence:


               
               GGGAACTGCAGCTTAGGTTCCTGGGTCTTGTTTTTCTGAGAAAGGAGAGTCAAACTCCAG
TCTCCAGCTCCCGACGGAACTTTTCTCCAGAGCATTGCGAAGAGGTTTCTTTTCCTTCAG
TTTAGCAGTTTCAGAGAGCCATGGCTCCAAAACCTCAGAGAAAGAAGCCCCTGAAACGCG
GCAAAACCAAACCAACGTTGCCTGTTAGAGAAGAAGAAGAACCTTTAAATATGGAGAGCA
TGGGTCATCCAGAAATTTATCCTTTAGTATTAACTACCATGACCCAGGAAATATTTGATT
GTCGAGTCGATGAAGATGTCACAGATGACCAACCTTATAAACTTATCAGAAAAGAAGATA
TTTTGGCAGACTTTGAACACAGAGCTGCAGTATCTGATTTCTACCCANTNNNAAAAANNN
NNCANNNATATNNTGGAGATGAGCTNCNG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAACTGCAGCTTAGGTTCCTGGGTCTTGTTTTTCTGAGAAAGGAGAGTCAAACTCCAG
TCTCCAGCTCCCGACGGAACTTTTCTCCAGAGCATTGCGAAGAGGTTTCTTTTCCTTCAG
TTTAGCAGTTTCAGAGAGCCATGGCTCCAAAACCTCAGAGAAAGAAGCCCCTGAAACGCG
GCAAAACCAAACCAACGTTGCCTGTTAGAGAAGAAGAAGAACCTTTAAATATGGAGAGCA
TGGGTCATCCAGAAATTTATCCTTTAGTATTAACTACCATGACCCAGGAAATATTTGATT
GTCGAGTCGATGAAGATGTCACAGATGACCAACCTTATAAACTTATCAGAAAAGAAGATA
TTTTGGCAGACTTTGAACACAGAGCTGCAGTATCTGATTTCTACCCANTNNNAAAAANNN
NNCANNNATATNNTGGAGATGAGCTNCNG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-106, + strand, RNAz p=0.513604

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-106, + strand, RNAz p=0.513604

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK054629, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK054629, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-134, gnl|bosTau2|chr3 (44518804-44518670)
               

               
               1-134, gnl|canFam2|chr6 (65973665-65973139)
               

               
               1-134, gnl|dasNov1|scaffold_7103 (91352-90916)
               

               
               1-134, gnl|hg17|chr1 (85239843-85240316)
               

               
               1-134, gnl|Hg17|chr1 (85240057-85240190)
               

               
               1-134, gnl|loxAfr1|scaffold_87770 (4528-4985)
               

               
               1-134, gnl|mm7|chr3 (146006822-146006349)
               

               
               1-134, gnl|Mm7|chr3 (146006587-146006463)
               

               
               1-134, gnl|oryCun1|scaffold_125513 (725-297)
               

               
               1-134, gnl|panTro1|chr1 (83913074-83913547)
               

               
               1-134, gnl|rheMac2|chr1 (87861228-87861700)
               

               
               1-134, gnl|rn3|chr2 (244263420-244262995)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr3 (44518804-44518670)
               

               
               1-134, gnl|canFam2|chr6 (65973665-65973139)
               

               
               1-134, gnl|dasNov1|scaffold_7103 (91352-90916)
               

               
               1-134, gnl|hg17|chr1 (85239843-85240316)
               

               
               1-134, gnl|Hg17|chr1 (85240057-85240190)
               

               
               1-134, gnl|loxAfr1|scaffold_87770 (4528-4985)
               

               
               1-134, gnl|mm7|chr3 (146006822-146006349)
               

               
               1-134, gnl|Mm7|chr3 (146006587-146006463)
               

               
               1-134, gnl|oryCun1|scaffold_125513 (725-297)
               

               
               1-134, gnl|panTro1|chr1 (83913074-83913547)
               

               
               1-134, gnl|rheMac2|chr1 (87861228-87861700)
               

               
               1-134, gnl|rn3|chr2 (244263420-244262995)

	1-134, gnl\|bosTau2\|chr3 (44518804-44518670)
	1-134, gnl\|canFam2\|chr6 (65973665-65973139)
	1-134, gnl\|dasNov1\|scaffold_7103 (91352-90916)
	1-134, gnl\|hg17\|chr1 (85239843-85240316)
	1-134, gnl\|Hg17\|chr1 (85240057-85240190)
	1-134, gnl\|loxAfr1\|scaffold_87770 (4528-4985)
	1-134, gnl\|mm7\|chr3 (146006822-146006349)
	1-134, gnl\|Mm7\|chr3 (146006587-146006463)
	1-134, gnl\|oryCun1\|scaffold_125513 (725-297)
	1-134, gnl\|panTro1\|chr1 (83913074-83913547)
	1-134, gnl\|rheMac2\|chr1 (87861228-87861700)
	1-134, gnl\|rn3\|chr2 (244263420-244262995)