Non-Coding RNA Search

LyN2-AR057D08LN05ADD08T

Sequence:


               
               ACNTNNNCGNNTGTGAGANCATGNNCAACGCCANNGCCATCTGTTCAGACAAGACAGGCA
CACTCACCANNAATCGCATGACAGTGGTGCAGGCCTATGTGGGTGACGTCCACTACAAGG
AGATCCCTGACCCCAGCTCCATCAATGCCAAGACCATGGAGCTACTAGTCAATGCCATCG
CCATCAACAGCGCCTACACCACCAAGATTCTGGTAAGTGGTGCAGCTTCCACCAGAAGGA
GCAATGACCAAGGGCAATGCAGAAGTACTGGACAGGTTGAATCATAATTTTCAATCCTGC
TGATGTATTTTGGGGTGGTCAGATAGCAAGCAGCTTGTTTCTCTTTGACTTAGCTAGGAT
GTTTGCAGGACAAAAAAGAGATTTTTGTTTATTGTGTTTTTTAGATCCCACTGTTGCCCT
CCCTGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACNTNNNCGNNTGTGAGANCATGNNCAACGCCANNGCCATCTGTTCAGACAAGACAGGCA
CACTCACCANNAATCGCATGACAGTGGTGCAGGCCTATGTGGGTGACGTCCACTACAAGG
AGATCCCTGACCCCAGCTCCATCAATGCCAAGACCATGGAGCTACTAGTCAATGCCATCG
CCATCAACAGCGCCTACACCACCAAGATTCTGGTAAGTGGTGCAGCTTCCACCAGAAGGA
GCAATGACCAAGGGCAATGCAGAAGTACTGGACAGGTTGAATCATAATTTTCAATCCTGC
TGATGTATTTTGGGGTGGTCAGATAGCAAGCAGCTTGTTTCTCTTTGACTTAGCTAGGAT
GTTTGCAGGACAAAAAAGAGATTTTTGTTTATTGTGTTTTTTAGATCCCACTGTTGCCCT
CCCTGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-235, - strand, RNAz p=0.992935

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-235, - strand, RNAz p=0.992935

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               84-212, AV588560 Bos taurus brain fetus Bos taurus cDNA clone E1BR001A07 
(dbj|AV588560.1|), blast E-value=0, identity=94.57% 
               

               
               81-212, BP200283 Sugano cDNA library, amygdala Homo sapiens cDNA clone 
(dbj|BP200283.1|), blast E-value=5.99994e-41, identity=91.67% 
               

               
               81-212, CM0-NT0133-131000-614-b07 NT0133 Homo sapiens cDNA, mRNA sequence 
(gb|BF918549.1|), blast E-value=5.99994e-41, identity=91.67% 
               

               
               81-235, AR057D08LN05ADD08T Porcine Lymph node cDNA library, Cot 5 Sus 
(gb|BI245010.1|), blast E-value=0, identity=100% 
               

               
               84-208, UI-M-GH0-chc-n-04-0-UI.r1 NIH_BMAP_GH0 Mus musculus cDNA clone 
(gb|CN525005.1|), blast E-value=4e-39, identity=92% 
               

               
               84-212, 1183922 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN283701.1|), 
blast E-value=0, identity=94.57%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               84-212, AV588560 Bos taurus brain fetus Bos taurus cDNA clone E1BR001A07 
(dbj|AV588560.1|), blast E-value=0, identity=94.57% 
               

               
               81-212, BP200283 Sugano cDNA library, amygdala Homo sapiens cDNA clone 
(dbj|BP200283.1|), blast E-value=5.99994e-41, identity=91.67% 
               

               
               81-212, CM0-NT0133-131000-614-b07 NT0133 Homo sapiens cDNA, mRNA sequence 
(gb|BF918549.1|), blast E-value=5.99994e-41, identity=91.67% 
               

               
               81-235, AR057D08LN05ADD08T Porcine Lymph node cDNA library, Cot 5 Sus 
(gb|BI245010.1|), blast E-value=0, identity=100% 
               

               
               84-208, UI-M-GH0-chc-n-04-0-UI.r1 NIH_BMAP_GH0 Mus musculus cDNA clone 
(gb|CN525005.1|), blast E-value=4e-39, identity=92% 
               

               
               84-212, 1183922 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN283701.1|), 
blast E-value=0, identity=94.57%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-365, gnl|bosTau2|chr22 (44586123-44585770)
               

               
               1-365, gnl|Hg17|chr3 (10388704-10388309)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-365, gnl|bosTau2|chr22 (44586123-44585770)
               

               
               1-365, gnl|Hg17|chr3 (10388704-10388309)

	84-212, AV588560 Bos taurus brain fetus Bos taurus cDNA clone E1BR001A07 (dbj\|AV588560.1\|), blast E-value=0, identity=94.57%
	81-212, BP200283 Sugano cDNA library, amygdala Homo sapiens cDNA clone (dbj\|BP200283.1\|), blast E-value=5.99994e-41, identity=91.67%
	81-212, CM0-NT0133-131000-614-b07 NT0133 Homo sapiens cDNA, mRNA sequence (gb\|BF918549.1\|), blast E-value=5.99994e-41, identity=91.67%
	81-235, AR057D08LN05ADD08T Porcine Lymph node cDNA library, Cot 5 Sus (gb\|BI245010.1\|), blast E-value=0, identity=100%
	84-208, UI-M-GH0-chc-n-04-0-UI.r1 NIH_BMAP_GH0 Mus musculus cDNA clone (gb\|CN525005.1\|), blast E-value=4e-39, identity=92%
	84-212, 1183922 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN283701.1\|), blast E-value=0, identity=94.57%

	1-365, gnl\|bosTau2\|chr22 (44586123-44585770)
	1-365, gnl\|Hg17\|chr3 (10388704-10388309)