Non-Coding RNA Search

Lym1-jns02_A01.r

Sequence:


               
               TACACAGGTCAGTGCTGAAAATGTTTTCTTGACTTCACTGATGGTGGCTGTTTTTCTAGT
CTCTTTGGTTTTAGACTCTTGAGTTTATCAGCATGATACCAAGTTCATGGAAAATATAGC
TTGTTTTGATTGAAGTACTGGAATCATGAAATTTCATCCTACATATTAGCGTAATAATTC
AGGCCCAAGCAAGCCAACTTGAGAGGCCTTGTCTTATTTAATCGAATTATCTGGAAAATT
GTTAAATATTACTCTGAAAAAAAGATGCAGTATGGCAAAAAAGTCGGTGCGTTTGCAGTT
ATCTTTTGGAAGCAAACACACAGCAAGCTGCTACAAGCACATCTTGACAAATATTGGGTT
TTCTTATTTGTAATAAGTCACTTGATAAATTAGTCACTTTATGGCTGTTTATTTTTTTCT
TCCAAAAGCACAACCTTTTGCTGCCAAGAATCACCGGAAGTCTAGGAAATGATTTACCTG
TCATTCTTGTTTAATCTCTGTTTCCTGTTCTGAGGTTCCTTTTCTCAGGTTAAGAGGTCT
TTGTACAGACTGTCTTCTGTTTTGTTTTTTGAAATTGGCTTTCAAGGGACTATATATATA
ACCTCTTAAAACCAAGACATTGCTGTAAGAACGCTCAGTTTCCTCTAAACTTCTTCCAAA
AAACACCGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACACAGGTCAGTGCTGAAAATGTTTTCTTGACTTCACTGATGGTGGCTGTTTTTCTAGT
CTCTTTGGTTTTAGACTCTTGAGTTTATCAGCATGATACCAAGTTCATGGAAAATATAGC
TTGTTTTGATTGAAGTACTGGAATCATGAAATTTCATCCTACATATTAGCGTAATAATTC
AGGCCCAAGCAAGCCAACTTGAGAGGCCTTGTCTTATTTAATCGAATTATCTGGAAAATT
GTTAAATATTACTCTGAAAAAAAGATGCAGTATGGCAAAAAAGTCGGTGCGTTTGCAGTT
ATCTTTTGGAAGCAAACACACAGCAAGCTGCTACAAGCACATCTTGACAAATATTGGGTT
TTCTTATTTGTAATAAGTCACTTGATAAATTAGTCACTTTATGGCTGTTTATTTTTTTCT
TCCAAAAGCACAACCTTTTGCTGCCAAGAATCACCGGAAGTCTAGGAAATGATTTACCTG
TCATTCTTGTTTAATCTCTGTTTCCTGTTCTGAGGTTCCTTTTCTCAGGTTAAGAGGTCT
TTGTACAGACTGTCTTCTGTTTTGTTTTTTGAAATTGGCTTTCAAGGGACTATATATATA
ACCTCTTAAAACCAAGACATTGCTGTAAGAACGCTCAGTTTCCTCTAAACTTCTTCCAAA
AAACACCGGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               342-456, - strand, RNAz p=0.994828
               

               
               497-628, + strand, RNAz p=0.981236

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-456, - strand, RNAz p=0.994828
               

               
               497-628, + strand, RNAz p=0.981236

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               193-628, gnl|bosTau2|chr12 (31577046-31577474)
               

               
               193-628, gnl|Hg17|chr13 (79807411-79807022)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-628, gnl|bosTau2|chr12 (31577046-31577474)
               

               
               193-628, gnl|Hg17|chr13 (79807411-79807022)

	342-456, - strand, RNAz p=0.994828
	497-628, + strand, RNAz p=0.981236

	193-628, gnl\|bosTau2\|chr12 (31577046-31577474)
	193-628, gnl\|Hg17\|chr13 (79807411-79807022)