Non-Coding RNA Search

Lym1-jns02_C01.r

Sequence:


               
               GAACAGCACGGGGCTGGGGAGGCGGTCAGAAGAGGCTGGGAGCAGCCTGGCCAGGCGCGT
CGTGGTCCCGGATGTACTGTAAGATGTCCATCTCGTCCATGGCTTGGATTTGCTGCTGCT
GCCTCTGCTGCCCCGCCACAGCCTCCGATGGACTCGCTCTGGGGGGAGCAGCTGGCTTTC
TGGGTAGCGCTGGCTTAGCTGCTACTGGCGGTTTGGGCTTAAGCTGGGGCTTGGGCTGGG
GGTGAGGTTTGGGCTCAACTCCCAGGTTCAGAATCTGATCCAAATCCTCTTCGACTCTGA
ATAGATCCTCTGAGGTCTCCCTGGGGCCCAGGCGGGACGGGGGTCCTCCACTCTCATGGG
CAGCAGGCAGCAGCAAGGGGTCACCCAGGGCAACAGCTCCGCCAAGGTCAGGGTCGTCAA
ACAGCTTCAGGGGGTCCCTGGAGGGTCCGCCCTCCGTGGGGCCCTCAGGGCGAGGCTTCC
GGCCGGGGCCAAAGAGCCCCTCGTCGAGAGTCTACCTCCTCATCAAAGATGGTGAGCCGG
GGCGAGGGTCTGGGCTTCACGGCCACCTCAGGGTGTTTCCTGGGCTTTTGGAGCGCATGA
TGCCCAGAGGGTCCAGGGCCTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACAGCACGGGGCTGGGGAGGCGGTCAGAAGAGGCTGGGAGCAGCCTGGCCAGGCGCGT
CGTGGTCCCGGATGTACTGTAAGATGTCCATCTCGTCCATGGCTTGGATTTGCTGCTGCT
GCCTCTGCTGCCCCGCCACAGCCTCCGATGGACTCGCTCTGGGGGGAGCAGCTGGCTTTC
TGGGTAGCGCTGGCTTAGCTGCTACTGGCGGTTTGGGCTTAAGCTGGGGCTTGGGCTGGG
GGTGAGGTTTGGGCTCAACTCCCAGGTTCAGAATCTGATCCAAATCCTCTTCGACTCTGA
ATAGATCCTCTGAGGTCTCCCTGGGGCCCAGGCGGGACGGGGGTCCTCCACTCTCATGGG
CAGCAGGCAGCAGCAAGGGGTCACCCAGGGCAACAGCTCCGCCAAGGTCAGGGTCGTCAA
ACAGCTTCAGGGGGTCCCTGGAGGGTCCGCCCTCCGTGGGGCCCTCAGGGCGAGGCTTCC
GGCCGGGGCCAAAGAGCCCCTCGTCGAGAGTCTACCTCCTCATCAAAGATGGTGAGCCGG
GGCGAGGGTCTGGGCTTCACGGCCACCTCAGGGTGTTTCCTGGGCTTTTGGAGCGCATGA
TGCCCAGAGGGTCCAGGGCCTCTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61821399|ref|XP_604451.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61821399|ref|XP_604451.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               155-298, + strand, RNAz p=0.841191
               

               
               482-588, - strand, RNAz p=0.630022

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-298, + strand, RNAz p=0.841191
               

               
               482-588, - strand, RNAz p=0.630022

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-298, gnl|bosTau2|chr11 (61681789-61682083)
               

               
               1-298, gnl|Hg17|chr2 (20740358-20740635)
               

               
               1-298, gnl|Mm7|chr12 (8298028-8297749)
               


               
               433-594, gnl|bosTau2|chr11 (61688907-61689068)
               

               
               433-594, gnl|canFam2|chr17 (18566896-18567293)
               

               
               433-594, gnl|dasNov1|scaffold_100306 (1551-1136)
               

               
               433-594, gnl|echTel1|scaffold_320359 (3482-3913)
               

               
               433-594, gnl|hg17|chr2 (20745982-20746402)
               

               
               433-594, gnl|Hg17|chr2 (20746120-20746281)
               

               
               433-594, gnl|mm7|chr12 (8292507-8292049)
               

               
               433-594, gnl|Mm7|chr12 (8292314-8292156)
               

               
               433-594, gnl|oryCun1|scaffold_196138 (32698-32253)
               

               
               433-594, gnl|panTro1|chr12 (21571252-21571672)
               

               
               433-594, gnl|rheMac2|chr13 (20550096-20550513)
               

               
               433-594, gnl|rn3|chr6 (31897555-31897102)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-298, gnl|bosTau2|chr11 (61681789-61682083)
               

               
               1-298, gnl|Hg17|chr2 (20740358-20740635)
               

               
               1-298, gnl|Mm7|chr12 (8298028-8297749)
               


               
               433-594, gnl|bosTau2|chr11 (61688907-61689068)
               

               
               433-594, gnl|canFam2|chr17 (18566896-18567293)
               

               
               433-594, gnl|dasNov1|scaffold_100306 (1551-1136)
               

               
               433-594, gnl|echTel1|scaffold_320359 (3482-3913)
               

               
               433-594, gnl|hg17|chr2 (20745982-20746402)
               

               
               433-594, gnl|Hg17|chr2 (20746120-20746281)
               

               
               433-594, gnl|mm7|chr12 (8292507-8292049)
               

               
               433-594, gnl|Mm7|chr12 (8292314-8292156)
               

               
               433-594, gnl|oryCun1|scaffold_196138 (32698-32253)
               

               
               433-594, gnl|panTro1|chr12 (21571252-21571672)
               

               
               433-594, gnl|rheMac2|chr13 (20550096-20550513)
               

               
               433-594, gnl|rn3|chr6 (31897555-31897102)

	155-298, + strand, RNAz p=0.841191
	482-588, - strand, RNAz p=0.630022

	1-298, gnl\|bosTau2\|chr11 (61681789-61682083)
	1-298, gnl\|Hg17\|chr2 (20740358-20740635)
	1-298, gnl\|Mm7\|chr12 (8298028-8297749)

	433-594, gnl\|bosTau2\|chr11 (61688907-61689068)
	433-594, gnl\|canFam2\|chr17 (18566896-18567293)
	433-594, gnl\|dasNov1\|scaffold_100306 (1551-1136)
	433-594, gnl\|echTel1\|scaffold_320359 (3482-3913)
	433-594, gnl\|hg17\|chr2 (20745982-20746402)
	433-594, gnl\|Hg17\|chr2 (20746120-20746281)
	433-594, gnl\|mm7\|chr12 (8292507-8292049)
	433-594, gnl\|Mm7\|chr12 (8292314-8292156)
	433-594, gnl\|oryCun1\|scaffold_196138 (32698-32253)
	433-594, gnl\|panTro1\|chr12 (21571252-21571672)
	433-594, gnl\|rheMac2\|chr13 (20550096-20550513)
	433-594, gnl\|rn3\|chr6 (31897555-31897102)