Non-Coding RNA Search

Lym1-jns04_E11.r

Sequence:


               
               CTTTTAAAGTTTTATTTCTCTAAAATAAGGAATTAACATTAAAAAGCACTTTTTTCAGGG
CTGGTCATTTTGGAGAGAGCTATGTAGAGCAAATAAGCAACAAAGTACAGTTTGGTCCCT
TTCCCCACCCTCCTTTCATTGTTCCTCATCTATTCTAACACAGAAGTCCCCCCACCCAGG
CCTTTTCCCCCAGGGCCTCCCCAGCCCAGAGATCTCACCTCCTCTGTTTCCTCTCGCAGG
AAGCTGTGGGGGGACCCATCCGAGTTCCGGCCAGAGAGATTCCTCACTGCCGATGGCACT
GCCATCCACAAGACCATGAGTGAGAAAGTTATTCTCTTCGGCATGGGCAAGCGCCGGTGC
ATAGGGGAGGTCCTGGCCAAGTGGGAGGTCTTCCTCTTCCTGGCCATCTTGCTGCAGCAG
CTAGAGTTCAGCGTGCCTCCAGGCGTGAAAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTAAAGTTTTATTTCTCTAAAATAAGGAATTAACATTAAAAAGCACTTTTTTCAGGG
CTGGTCATTTTGGAGAGAGCTATGTAGAGCAAATAAGCAACAAAGTACAGTTTGGTCCCT
TTCCCCACCCTCCTTTCATTGTTCCTCATCTATTCTAACACAGAAGTCCCCCCACCCAGG
CCTTTTCCCCCAGGGCCTCCCCAGCCCAGAGATCTCACCTCCTCTGTTTCCTCTCGCAGG
AAGCTGTGGGGGGACCCATCCGAGTTCCGGCCAGAGAGATTCCTCACTGCCGATGGCACT
GCCATCCACAAGACCATGAGTGAGAAAGTTATTCTCTTCGGCATGGGCAAGCGCCGGTGC
ATAGGGGAGGTCCTGGCCAAGTGGGAGGTCTTCCTCTTCCTGGCCATCTTGCTGCAGCAG
CTAGAGTTCAGCGTGCCTCCAGGCGTGAAAGTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               153-429, - strand, RNAz p=0.998028

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-429, - strand, RNAz p=0.998028

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               240-429, 796245 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX735054.1|), 
blast E-value=0, identity=88.42% 
               

               
               240-429, 797464 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX735469.1|), 
blast E-value=0, identity=88.42% 
               

               
               240-429, 804443 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX739214.1|), 
blast E-value=0, identity=88.42% 
               

               
               265-429, GL-Cf-4541 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN747749.1|), blast E-value=0, identity=90.91% 
               

               
               240-429, Hw_Liver_9_F05 Bos taurus CF-24-HW liver cDNA library Bos taurus 
(gb|DV787662.1|), blast E-value=0, identity=88.42% 
               

               
               240-429, 000125BLIB004815HT BLIB Bos taurus cDNA, mRNA sequence 
(gb|DY118797.1|), blast E-value=0, identity=88.42%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               240-429, 796245 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX735054.1|), 
blast E-value=0, identity=88.42% 
               

               
               240-429, 797464 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX735469.1|), 
blast E-value=0, identity=88.42% 
               

               
               240-429, 804443 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX739214.1|), 
blast E-value=0, identity=88.42% 
               

               
               265-429, GL-Cf-4541 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN747749.1|), blast E-value=0, identity=90.91% 
               

               
               240-429, Hw_Liver_9_F05 Bos taurus CF-24-HW liver cDNA library Bos taurus 
(gb|DV787662.1|), blast E-value=0, identity=88.42% 
               

               
               240-429, 000125BLIB004815HT BLIB Bos taurus cDNA, mRNA sequence 
(gb|DY118797.1|), blast E-value=0, identity=88.42%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-454, gnl|bosTau2|chr21 (22940981-22941436)
               

               
               1-454, gnl|Hg17|chr15 (72833618-72834399)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-454, gnl|bosTau2|chr21 (22940981-22941436)
               

               
               1-454, gnl|Hg17|chr15 (72833618-72834399)

	240-429, 796245 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CX735054.1\|), blast E-value=0, identity=88.42%
	240-429, 797464 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CX735469.1\|), blast E-value=0, identity=88.42%
	240-429, 804443 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CX739214.1\|), blast E-value=0, identity=88.42%
	265-429, GL-Cf-4541 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue (gb\|DN747749.1\|), blast E-value=0, identity=90.91%
	240-429, Hw_Liver_9_F05 Bos taurus CF-24-HW liver cDNA library Bos taurus (gb\|DV787662.1\|), blast E-value=0, identity=88.42%
	240-429, 000125BLIB004815HT BLIB Bos taurus cDNA, mRNA sequence (gb\|DY118797.1\|), blast E-value=0, identity=88.42%

	1-454, gnl\|bosTau2\|chr21 (22940981-22941436)
	1-454, gnl\|Hg17\|chr15 (72833618-72834399)