Non-Coding RNA Search

Lym1-jns104_E11.f

Sequence:


               
               ATTCTATGCAAAAGCTTTTTTTTTAAAAGGTCAGGGGTCCCATAAATAGAGCCCCTAAGG
GGGGGTTTTCACCCCTAAAACCCCTTAATCGGGGCCTTCTGGGAAGCAGCGCTGGGGGGG
TTGGGTTCCCCAAGGGCAAAACTTCCTTCATCCTTTTTTTTCAGGCGAAACCCCCACCGC
AGAATAAGGGAAATGGCAAAAAAAAAGCCGATAACCCCCCCAGCAATGACAGCTGCCAGG
ACTTTTGTTTTTTTAAACAGATGGGCTGGGGGCTTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTATGCAAAAGCTTTTTTTTTAAAAGGTCAGGGGTCCCATAAATAGAGCCCCTAAGG
GGGGGTTTTCACCCCTAAAACCCCTTAATCGGGGCCTTCTGGGAAGCAGCGCTGGGGGGG
TTGGGTTCCCCAAGGGCAAAACTTCCTTCATCCTTTTTTTTCAGGCGAAACCCCCACCGC
AGAATAAGGGAAATGGCAAAAAAAAAGCCGATAACCCCCCCAGCAATGACAGCTGCCAGG
ACTTTTGTTTTTTTAAACAGATGGGCTGGGGGCTTCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47222208|emb|CAG11087.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47222208|emb|CAG11087.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.979204

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.979204

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-235, gnl|bosTau2|chr14 (41827229-41827463)
               

               
               1-235, gnl|Hg17|chr8 (97691019-97690786)
               

               
               1-235, gnl|Mm7|chr15 (33141230-33140997)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-235, gnl|bosTau2|chr14 (41827229-41827463)
               

               
               1-235, gnl|Hg17|chr8 (97691019-97690786)
               

               
               1-235, gnl|Mm7|chr15 (33141230-33140997)

	1-235, gnl\|bosTau2\|chr14 (41827229-41827463)
	1-235, gnl\|Hg17\|chr8 (97691019-97690786)
	1-235, gnl\|Mm7\|chr15 (33141230-33140997)