Non-Coding RNA Search

Lym1-jns16bA03.f

Sequence:


               
               GGATCCTATGCCTCCTCGGCGGTCACCTTCCCAGGAGTCAAGGTCATCTATGACTTTGGT
GCCTCCTTCATCGTCATCCTCGTGGCCTGGGCCGGCTGCTCCGGGCTGGTTTTCCTCAAC
TGCTTCTTTAACTGGCCCCTGGAGCCCTTCCCGGGGCCAGAGGACATGGACTACACGGTG
AAGATCAAGTTCAGCTGGCTGGGCTTTGACCACAAGATCACAGGGAAGCAGTTCTACAAG
CAGGTGACCACGGTGGGCCGCCGCCTCAGCGTGGGCAGCTCCATGCGGAGCGCCAAGGAG
CAGGCGGCGCTGCAGGAGGGCCACAAGCTGTGCCTGTCCACCGTCGACCTAGAGGTCAAG
TGCCAGCCCGAGGCCGCAGCGGCCCCCTCGTTCATGCACAGCGTGTTCAGCCCGATCCTG
CTGCTCAGCCTGGTCACCATGTGCGTGACGCAGCTGCGCCTCATCTTCTACATGGGCGCC
ATGAACAACATCCTCAAGTTCCTGGTCAAAGGCGACCAGGAGATCGTGGGCCTCTACACC
TCCATCTTTGGGGTGCTCCAGCTGCTCTGCCTGCTCACGGCCCCTGTCATCGGCTACATC
ATGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCCTATGCCTCCTCGGCGGTCACCTTCCCAGGAGTCAAGGTCATCTATGACTTTGGT
GCCTCCTTCATCGTCATCCTCGTGGCCTGGGCCGGCTGCTCCGGGCTGGTTTTCCTCAAC
TGCTTCTTTAACTGGCCCCTGGAGCCCTTCCCGGGGCCAGAGGACATGGACTACACGGTG
AAGATCAAGTTCAGCTGGCTGGGCTTTGACCACAAGATCACAGGGAAGCAGTTCTACAAG
CAGGTGACCACGGTGGGCCGCCGCCTCAGCGTGGGCAGCTCCATGCGGAGCGCCAAGGAG
CAGGCGGCGCTGCAGGAGGGCCACAAGCTGTGCCTGTCCACCGTCGACCTAGAGGTCAAG
TGCCAGCCCGAGGCCGCAGCGGCCCCCTCGTTCATGCACAGCGTGTTCAGCCCGATCCTG
CTGCTCAGCCTGGTCACCATGTGCGTGACGCAGCTGCGCCTCATCTTCTACATGGGCGCC
ATGAACAACATCCTCAAGTTCCTGGTCAAAGGCGACCAGGAGATCGTGGGCCTCTACACC
TCCATCTTTGGGGTGCTCCAGCTGCTCTGCCTGCTCACGGCCCCTGTCATCGGCTACATC
ATGGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61815077|ref|XP_589384.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61815077|ref|XP_589384.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               246-365, + strand, RNAz p=0.536417

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               246-365, + strand, RNAz p=0.536417

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               167-390, gnl|bosTau2|chr19 (17244099-17243876)
               

               
               167-390, gnl|Hg17|chr17 (1441524-1441302)
               

               
               167-390, gnl|Mm7|chr11 (75644555-75644775)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-390, gnl|bosTau2|chr19 (17244099-17243876)
               

               
               167-390, gnl|Hg17|chr17 (1441524-1441302)
               

               
               167-390, gnl|Mm7|chr11 (75644555-75644775)

	167-390, gnl\|bosTau2\|chr19 (17244099-17243876)
	167-390, gnl\|Hg17\|chr17 (1441524-1441302)
	167-390, gnl\|Mm7\|chr11 (75644555-75644775)