Non-Coding RNA Search

Lym1-jns17bF04.f

Sequence:


               
               GAGTCTTCTGACTTCGAATCAAGCTCTGAGTCCTCATCATCATCCTCGGAGGATGAAGAA
GAGCTGACAGCAGGGGAGGAGGATGAAGAGGAGGAGGAAGACGAGGACGAGGAGGAGGAG
GAGGCAGCTCAGATGAGAGCATGGCTCCTGCTGCTCCTGACGAGGACTTTGAGGAGGTTA
TGGCTATGGGGGCAGCCGCAGTGGGCCCGGAAGAGGAGGTGGACATCGAGGCTGAGGATG
AAGCTCCTGAGGAGCGGGCCCCCATGCTGGAAGAGCCCTCCTTGCCTGTGGGGGTCGAGG
ATCTGGCTGGCTGCAAGGAGCCCCCTGAGGAGCCAGGCCTGAATGAGCAAGTGGCTGGGT
TGCCCTCTCCAGAACCTGCTGCGGGAGAGATGGAAGCCCGGCCCCTGCCATCCCCGGAGC
TCACCCAAGAGGACAAGTTGGAAGCGGAACCTGCGCCCCCGACGCTGCTCTCCTTACCTC
TGCAGCCACCATTGCCGCCCCCTCGGCTGCCCCGGCCACCCAGCCCACCACCAGAGCCCG
AGACCACAGACCTCCCACACCCAGCGGTCCCTCTGGAGCCTCCTCATGAGGACCAGCCCC
CACGTACTCCGAGCCTCTGTGGCAGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTCTTCTGACTTCGAATCAAGCTCTGAGTCCTCATCATCATCCTCGGAGGATGAAGAA
GAGCTGACAGCAGGGGAGGAGGATGAAGAGGAGGAGGAAGACGAGGACGAGGAGGAGGAG
GAGGCAGCTCAGATGAGAGCATGGCTCCTGCTGCTCCTGACGAGGACTTTGAGGAGGTTA
TGGCTATGGGGGCAGCCGCAGTGGGCCCGGAAGAGGAGGTGGACATCGAGGCTGAGGATG
AAGCTCCTGAGGAGCGGGCCCCCATGCTGGAAGAGCCCTCCTTGCCTGTGGGGGTCGAGG
ATCTGGCTGGCTGCAAGGAGCCCCCTGAGGAGCCAGGCCTGAATGAGCAAGTGGCTGGGT
TGCCCTCTCCAGAACCTGCTGCGGGAGAGATGGAAGCCCGGCCCCTGCCATCCCCGGAGC
TCACCCAAGAGGACAAGTTGGAAGCGGAACCTGCGCCCCCGACGCTGCTCTCCTTACCTC
TGCAGCCACCATTGCCGCCCCCTCGGCTGCCCCGGCCACCCAGCCCACCACCAGAGCCCG
AGACCACAGACCTCCCACACCCAGCGGTCCCTCTGGAGCCTCCTCATGAGGACCAGCCCC
CACGTACTCCGAGCCTCTGTGGCAGCCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-110, - strand, RNAz p=0.999402
               

               
               228-347, - strand, RNAz p=0.72137

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-110, - strand, RNAz p=0.999402
               

               
               228-347, - strand, RNAz p=0.72137

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               4-128, + strand, RNAmicro p=0.999985
               

               
               293-475, - strand, RNAmicro p=0.969966

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               4-128, + strand, RNAmicro p=0.999985
               

               
               293-475, - strand, RNAmicro p=0.969966

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-429, gnl|bosTau2|chr17 (28741348-28741774)
               

               
               1-429, gnl|Hg17|chr12 (120720089-120720521)
               

               
               1-429, gnl|Mm7|chr5 (122388994-122389477)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-429, gnl|bosTau2|chr17 (28741348-28741774)
               

               
               1-429, gnl|Hg17|chr12 (120720089-120720521)
               

               
               1-429, gnl|Mm7|chr5 (122388994-122389477)

	1-110, - strand, RNAz p=0.999402
	228-347, - strand, RNAz p=0.72137

	4-128, + strand, RNAmicro p=0.999985
	293-475, - strand, RNAmicro p=0.969966

	1-429, gnl\|bosTau2\|chr17 (28741348-28741774)
	1-429, gnl\|Hg17\|chr12 (120720089-120720521)
	1-429, gnl\|Mm7\|chr5 (122388994-122389477)