Non-Coding RNA Search

Lym1-jns28_A09.f

Sequence:


               
               CCCAGCTGGGGGCCCTTTTAATGTTTAACATTCCAGGCCCAAAAAAATGGGTTCTAACCC
TGTTATAAATAATTGCGACCAGTCATCAGGGGCTCCAAAGGGGACAGAATTTTCATCCCC
TCCATGCTTATCGTTTTTGTTTTTGGGGGGTAACTTAATAAAATCATCAATTCAAAAAAG
GGGGATTGCACCTTCAGTTGCAAATTTAAAACTTTTTACTTTAACTTTGGGGGGTTAAAA
CCCCCCTGCTTGCTTGTTGTCTGGGGGTTTCCCATTGCCCAAGTCAAAACCAATCCATTT
TAAATTTTTGCGTTCGGGGTTAACTTGACCCTCATTATAAAAGGCTTTTAATTTTGCCAC
CAAATCCGGGGAGTTTTGGGCAGCTTTAACTGCCAAAGTTTTAGGAATGCCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGCTGGGGGCCCTTTTAATGTTTAACATTCCAGGCCCAAAAAAATGGGTTCTAACCC
TGTTATAAATAATTGCGACCAGTCATCAGGGGCTCCAAAGGGGACAGAATTTTCATCCCC
TCCATGCTTATCGTTTTTGTTTTTGGGGGGTAACTTAATAAAATCATCAATTCAAAAAAG
GGGGATTGCACCTTCAGTTGCAAATTTAAAACTTTTTACTTTAACTTTGGGGGGTTAAAA
CCCCCCTGCTTGCTTGTTGTCTGGGGGTTTCCCATTGCCCAAGTCAAAACCAATCCATTT
TAAATTTTTGCGTTCGGGGTTAACTTGACCCTCATTATAAAAGGCTTTTAATTTTGCCAC
CAAATCCGGGGAGTTTTGGGCAGCTTTAACTGCCAAAGTTTTAGGAATGCCAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               TCPA_AMBME

Coded protein: 1 entry(ies)

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Protein identifier


               
               TCPA_AMBME

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               322-416, - strand, RNAz p=0.600991

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-416, - strand, RNAz p=0.600991

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-416, gnl|bosTau2|chr12 (1158578-1158188)
               

               
               17-416, gnl|Hg17|chr12 (19987293-19986882)
               

               
               17-416, gnl|Mm7|chr17 (11837560-11838530)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-416, gnl|bosTau2|chr12 (1158578-1158188)
               

               
               17-416, gnl|Hg17|chr12 (19987293-19986882)
               

               
               17-416, gnl|Mm7|chr17 (11837560-11838530)

	17-416, gnl\|bosTau2\|chr12 (1158578-1158188)
	17-416, gnl\|Hg17\|chr12 (19987293-19986882)
	17-416, gnl\|Mm7\|chr17 (11837560-11838530)