Non-Coding RNA Search

Lym1-jns31_H04.f

Sequence:


               
               AAAAAACAGCTAACAAATAGCTTTAATGAACCCCGGGGGGGTTTTGAAAACCAAGGGCCT
CCCTTTTTTCATGAAGTTTAAACCTGACCCTAATTAACTAGTTAATTTTTTTTGCCCATT
CCAACCGGTTTATACTGGGGATATGTATGATCTGGTGCTTTAGTCCCCCCTGGCCCTGGG
GCCCCAAAAGGGAGGGGGGGGGCCCCCTGTTTCCTGGGAGTTAACTAAACCTAGTTTAGG
GCTTTTTTGAGCCCCCCAGGCTTTGGGACCCTTGAAATTTTAATTAGGGCAAAAAAGGGC
TAAGTTGAAACAGCTTGGACTCCCTCAAGGTTACTCACTTTCAGGGCCCTATAAACTAAT
GGGGGCTTTGAAATTTAAAATGTAAAAAAAAAATCCCTGCCTGGAGCAACAGCTGTCCCC
AAGCTGACAAGGGGATTTGGGTTAAATTAGCCCCTCCAAATAGGGGGGGGAACCCCCCTA
AA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAACAGCTAACAAATAGCTTTAATGAACCCCGGGGGGGTTTTGAAAACCAAGGGCCT
CCCTTTTTTCATGAAGTTTAAACCTGACCCTAATTAACTAGTTAATTTTTTTTGCCCATT
CCAACCGGTTTATACTGGGGATATGTATGATCTGGTGCTTTAGTCCCCCCTGGCCCTGGG
GCCCCAAAAGGGAGGGGGGGGGCCCCCTGTTTCCTGGGAGTTAACTAAACCTAGTTTAGG
GCTTTTTTGAGCCCCCCAGGCTTTGGGACCCTTGAAATTTTAATTAGGGCAAAAAAGGGC
TAAGTTGAAACAGCTTGGACTCCCTCAAGGTTACTCACTTTCAGGGCCCTATAAACTAAT
GGGGGCTTTGAAATTTAAAATGTAAAAAAAAAATCCCTGCCTGGAGCAACAGCTGTCCCC
AAGCTGACAAGGGGATTTGGGTTAAATTAGCCCCTCCAAATAGGGGGGGGAACCCCCCTA
AA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               147-261, - strand, RNAz p=0.744866
               

               
               302-482, - strand, RNAz p=0.971558

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-261, - strand, RNAz p=0.744866
               

               
               302-482, - strand, RNAz p=0.971558

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-482, gnl|bosTau2|chr5 (16268814-16269302)
               

               
               2-482, gnl|Hg17|chr12 (53224056-53223559)
               

               
               2-482, gnl|Mm7|chr15 (103487625-103487137)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-482, gnl|bosTau2|chr5 (16268814-16269302)
               

               
               2-482, gnl|Hg17|chr12 (53224056-53223559)
               

               
               2-482, gnl|Mm7|chr15 (103487625-103487137)

	147-261, - strand, RNAz p=0.744866
	302-482, - strand, RNAz p=0.971558

	2-482, gnl\|bosTau2\|chr5 (16268814-16269302)
	2-482, gnl\|Hg17\|chr12 (53224056-53223559)
	2-482, gnl\|Mm7\|chr15 (103487625-103487137)