Non-Coding RNA Search

Lym1-jns32_D03.f

Sequence:


               
               TGCGCCTCCATCACCAGGAAGTGTGGGCCCTTCCCAGAGCGGGCGCTGCTCACACACGTG
CCACTTTGATTCATCGTCTCCCTTTCTCTCTCTGTCCTTTATTTTTCTGCCCTCTTTGGC
CTTTGATTGCTTTTCGGGAGTTTATCATATTGAACTTTTATCCCCTTCCAGGAAAGCCTA
TTCTTTTTTTCTTCCCTTTCACAATTAATAAATAATCGTGAGAGCACTTCTTTGGACAGA
AGCACATCCTGCCTCCTAAAGAGAACTGCCGGAGCGTCTCTTTTGGGGCCCCTCCGGGTC
TGTGAAGGGCACATCACCTGTCACTAGAAGAGGACTTGGGTCCATCGCCGTGCCGGGGTT
GGGGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGCCTCCATCACCAGGAAGTGTGGGCCCTTCCCAGAGCGGGCGCTGCTCACACACGTG
CCACTTTGATTCATCGTCTCCCTTTCTCTCTCTGTCCTTTATTTTTCTGCCCTCTTTGGC
CTTTGATTGCTTTTCGGGAGTTTATCATATTGAACTTTTATCCCCTTCCAGGAAAGCCTA
TTCTTTTTTTCTTCCCTTTCACAATTAATAAATAATCGTGAGAGCACTTCTTTGGACAGA
AGCACATCCTGCCTCCTAAAGAGAACTGCCGGAGCGTCTCTTTTGGGGCCCCTCCGGGTC
TGTGAAGGGCACATCACCTGTCACTAGAAGAGGACTTGGGTCCATCGCCGTGCCGGGGTT
GGGGGGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               151-256, - strand, RNAz p=0.564705
               

               
               165-279, - strand, RNAz p=0.872583

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-256, - strand, RNAz p=0.564705
               

               
               165-279, - strand, RNAz p=0.872583

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               6-365, gnl|bosTau2|chr25 (9219209-9219569)
               

               
               6-365, gnl|canFam2|chr6 (34634160-34633545)
               

               
               6-365, gnl|dasNov1|scaffold_65852 (1062-1666)
               

               
               6-365, gnl|hg17|chr16 (11150054-11150622)
               

               
               6-365, gnl|Hg17|chr16 (11150505-11150146)
               

               
               6-365, gnl|loxAfr1|scaffold_85971 (572-1202)
               

               
               6-365, gnl|mm7|chr16 (10390676-10391237)
               

               
               6-365, gnl|Mm7|chr16 (10391124-10390774)
               

               
               6-365, gnl|monDom2|scaffold_17 (33495414-33494798)
               

               
               6-365, gnl|oryCun1|scaffold_211033 (567-55)
               

               
               6-365, gnl|panTro1|chr18 (11481346-11481914)
               

               
               6-365, gnl|rheMac2|chr20 (11220308-11220879)
               

               
               6-365, gnl|rn3|chr10 (4902715-4902175)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-365, gnl|bosTau2|chr25 (9219209-9219569)
               

               
               6-365, gnl|canFam2|chr6 (34634160-34633545)
               

               
               6-365, gnl|dasNov1|scaffold_65852 (1062-1666)
               

               
               6-365, gnl|hg17|chr16 (11150054-11150622)
               

               
               6-365, gnl|Hg17|chr16 (11150505-11150146)
               

               
               6-365, gnl|loxAfr1|scaffold_85971 (572-1202)
               

               
               6-365, gnl|mm7|chr16 (10390676-10391237)
               

               
               6-365, gnl|Mm7|chr16 (10391124-10390774)
               

               
               6-365, gnl|monDom2|scaffold_17 (33495414-33494798)
               

               
               6-365, gnl|oryCun1|scaffold_211033 (567-55)
               

               
               6-365, gnl|panTro1|chr18 (11481346-11481914)
               

               
               6-365, gnl|rheMac2|chr20 (11220308-11220879)
               

               
               6-365, gnl|rn3|chr10 (4902715-4902175)

	151-256, - strand, RNAz p=0.564705
	165-279, - strand, RNAz p=0.872583

	6-365, gnl\|bosTau2\|chr25 (9219209-9219569)
	6-365, gnl\|canFam2\|chr6 (34634160-34633545)
	6-365, gnl\|dasNov1\|scaffold_65852 (1062-1666)
	6-365, gnl\|hg17\|chr16 (11150054-11150622)
	6-365, gnl\|Hg17\|chr16 (11150505-11150146)
	6-365, gnl\|loxAfr1\|scaffold_85971 (572-1202)
	6-365, gnl\|mm7\|chr16 (10390676-10391237)
	6-365, gnl\|Mm7\|chr16 (10391124-10390774)
	6-365, gnl\|monDom2\|scaffold_17 (33495414-33494798)
	6-365, gnl\|oryCun1\|scaffold_211033 (567-55)
	6-365, gnl\|panTro1\|chr18 (11481346-11481914)
	6-365, gnl\|rheMac2\|chr20 (11220308-11220879)
	6-365, gnl\|rn3\|chr10 (4902715-4902175)