Non-Coding RNA Search

Lym1-jns32_H12.f

Sequence:


               
               AAAATAAAAAAAACTTTATTTTTTATCCAGTAAATCTCAGGGGAAAGTCCAACAGTAACA
GGGGCCCCAACGGGCTTTGGGGGGGTGAAACCCCAACCCCGGGCAAGGGGGGCAGGGCAA
AACCAGCTCCCCCAACCCGGGGGTGCAAGGGTGAGGGGAGGAAACCCCCTGTAGGCCCCT
CCTGCGGGGTAAGGAGGGGGTGCTGGTGGAGGGTCCGGGGGACAGGCCAGGGAAATGGAG
GAACCCGGGCCACGTGTGTTTGTCAACCCGTCTGGCCACTGGGTGTGTGTGTATGTGTGT
GTGTGTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATAAAAAAAACTTTATTTTTTATCCAGTAAATCTCAGGGGAAAGTCCAACAGTAACA
GGGGCCCCAACGGGCTTTGGGGGGGTGAAACCCCAACCCCGGGCAAGGGGGGCAGGGCAA
AACCAGCTCCCCCAACCCGGGGGTGCAAGGGTGAGGGGAGGAAACCCCCTGTAGGCCCCT
CCTGCGGGGTAAGGAGGGGGTGCTGGTGGAGGGTCCGGGGGACAGGCCAGGGAAATGGAG
GAACCCGGGCCACGTGTGTTTGTCAACCCGTCTGGCCACTGGGTGTGTGTGTATGTGTGT
GTGTGTGTGTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-278, - strand, RNAz p=0.999972

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-278, - strand, RNAz p=0.999972

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               90-257, 60518 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|AW484393.1|), 
blast E-value=2e-23, identity=85.29% 
               

               
               90-257, 63241 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|AW484958.1|), 
blast E-value=2e-23, identity=85.29% 
               

               
               86-257, 965080 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK777931.1|), 
blast E-value=3e-28, identity=86.21% 
               

               
               90-257, UMC-bend_0A01-011-a01 Day 5 Uterus bend Bos taurus cDNA 3', mRNA 
(gb|CK779244.1|), blast E-value=4e-21, identity=84.71% 
               

               
               90-257, 1366432 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN533544.1|), 
blast E-value=2e-23, identity=85.29% 
               

               
               90-257, 1371981 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535922.1|), 
blast E-value=2e-23, identity=85.29%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               90-257, 60518 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|AW484393.1|), 
blast E-value=2e-23, identity=85.29% 
               

               
               90-257, 63241 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|AW484958.1|), 
blast E-value=2e-23, identity=85.29% 
               

               
               86-257, 965080 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK777931.1|), 
blast E-value=3e-28, identity=86.21% 
               

               
               90-257, UMC-bend_0A01-011-a01 Day 5 Uterus bend Bos taurus cDNA 3', mRNA 
(gb|CK779244.1|), blast E-value=4e-21, identity=84.71% 
               

               
               90-257, 1366432 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN533544.1|), 
blast E-value=2e-23, identity=85.29% 
               

               
               90-257, 1371981 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535922.1|), 
blast E-value=2e-23, identity=85.29%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-310, gnl|bosTau2|chr19 (34306058-34306364)
               

               
               3-310, gnl|Hg17|chr17 (35767418-35767091)
               

               
               3-310, gnl|Mm7|chr11 (99083975-99083689)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-310, gnl|bosTau2|chr19 (34306058-34306364)
               

               
               3-310, gnl|Hg17|chr17 (35767418-35767091)
               

               
               3-310, gnl|Mm7|chr11 (99083975-99083689)

	90-257, 60518 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW484393.1\|), blast E-value=2e-23, identity=85.29%
	90-257, 63241 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW484958.1\|), blast E-value=2e-23, identity=85.29%
	86-257, 965080 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK777931.1\|), blast E-value=3e-28, identity=86.21%
	90-257, UMC-bend_0A01-011-a01 Day 5 Uterus bend Bos taurus cDNA 3', mRNA (gb\|CK779244.1\|), blast E-value=4e-21, identity=84.71%
	90-257, 1366432 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN533544.1\|), blast E-value=2e-23, identity=85.29%
	90-257, 1371981 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN535922.1\|), blast E-value=2e-23, identity=85.29%

	3-310, gnl\|bosTau2\|chr19 (34306058-34306364)
	3-310, gnl\|Hg17\|chr17 (35767418-35767091)
	3-310, gnl\|Mm7\|chr11 (99083975-99083689)