Non-Coding RNA Search

Lym1-jns58_B05.f

Sequence:


               
               AGGAACAGCGGCCCATGCCTGGAATTTATTGGGGGCTACTGGTTATAAAAAACTCAAATA
GTCCCGCCCATGCCTAATATTTCCAACTTAAACAGGGGACCCTACAGGGGGCCCTTTTTG
GCAAACAAACAAAAAAAGGGTCCCCTGCCTGGAGCTTTGAGTTGTATTCCAGGGCATGAG
GGAAGCCGGCCCCCCAAGTAAAGGAAAATCCCCAACTACCGGGGCAATCAATACAGGGCA
GTAATTGGGAAAAATTAACACATGGGTCCATTTAATTTAACCAAACAGTTTTGTAACTTT
CCAAAAAAAATGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAACAGCGGCCCATGCCTGGAATTTATTGGGGGCTACTGGTTATAAAAAACTCAAATA
GTCCCGCCCATGCCTAATATTTCCAACTTAAACAGGGGACCCTACAGGGGGCCCTTTTTG
GCAAACAAACAAAAAAAGGGTCCCCTGCCTGGAGCTTTGAGTTGTATTCCAGGGCATGAG
GGAAGCCGGCCCCCCAAGTAAAGGAAAATCCCCAACTACCGGGGCAATCAATACAGGGCA
GTAATTGGGAAAAATTAACACATGGGTCCATTTAATTTAACCAAACAGTTTTGTAACTTT
CCAAAAAAAATGGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               189-308, - strand, RNAz p=0.98452

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-308, - strand, RNAz p=0.98452

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-315, gnl|bosTau2|chr28 (22650308-22650622)
               

               
               1-315, gnl|canFam2|chr4 (27186665-27186883)
               

               
               1-315, gnl|dasNov1|scaffold_13893 (90916-90698)
               

               
               1-315, gnl|echTel1|scaffold_280752 (48327-48536)
               

               
               1-315, gnl|galGal2|chr6 (15434711-15434493)
               

               
               1-315, gnl|hg17|chr10 (74866572-74866790)
               

               
               1-315, gnl|Hg17|chr10 (74866570-74866885)
               

               
               1-315, gnl|loxAfr1|scaffold_72157 (7910-7691)
               

               
               1-315, gnl|mm7|chr14 (18156589-18156807)
               

               
               1-315, gnl|Mm7|chr14 (18156587-18156900)
               

               
               1-315, gnl|monDom2|scaffold_14 (1460551-1460760)
               

               
               1-315, gnl|oryCun1|scaffold_214589 (45045-45263)
               

               
               1-315, gnl|panTro1|chr8_random (40332579-40332797)
               

               
               1-315, gnl|rheMac2|chr9 (63495821-63495603)
               

               
               1-315, gnl|rn3|chr15 (4031119-4030902)
               

               
               1-315, gnl|xenTro1|scaffold_1324 (166797-166588)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-315, gnl|bosTau2|chr28 (22650308-22650622)
               

               
               1-315, gnl|canFam2|chr4 (27186665-27186883)
               

               
               1-315, gnl|dasNov1|scaffold_13893 (90916-90698)
               

               
               1-315, gnl|echTel1|scaffold_280752 (48327-48536)
               

               
               1-315, gnl|galGal2|chr6 (15434711-15434493)
               

               
               1-315, gnl|hg17|chr10 (74866572-74866790)
               

               
               1-315, gnl|Hg17|chr10 (74866570-74866885)
               

               
               1-315, gnl|loxAfr1|scaffold_72157 (7910-7691)
               

               
               1-315, gnl|mm7|chr14 (18156589-18156807)
               

               
               1-315, gnl|Mm7|chr14 (18156587-18156900)
               

               
               1-315, gnl|monDom2|scaffold_14 (1460551-1460760)
               

               
               1-315, gnl|oryCun1|scaffold_214589 (45045-45263)
               

               
               1-315, gnl|panTro1|chr8_random (40332579-40332797)
               

               
               1-315, gnl|rheMac2|chr9 (63495821-63495603)
               

               
               1-315, gnl|rn3|chr15 (4031119-4030902)
               

               
               1-315, gnl|xenTro1|scaffold_1324 (166797-166588)

	1-315, gnl\|bosTau2\|chr28 (22650308-22650622)
	1-315, gnl\|canFam2\|chr4 (27186665-27186883)
	1-315, gnl\|dasNov1\|scaffold_13893 (90916-90698)
	1-315, gnl\|echTel1\|scaffold_280752 (48327-48536)
	1-315, gnl\|galGal2\|chr6 (15434711-15434493)
	1-315, gnl\|hg17\|chr10 (74866572-74866790)
	1-315, gnl\|Hg17\|chr10 (74866570-74866885)
	1-315, gnl\|loxAfr1\|scaffold_72157 (7910-7691)
	1-315, gnl\|mm7\|chr14 (18156589-18156807)
	1-315, gnl\|Mm7\|chr14 (18156587-18156900)
	1-315, gnl\|monDom2\|scaffold_14 (1460551-1460760)
	1-315, gnl\|oryCun1\|scaffold_214589 (45045-45263)
	1-315, gnl\|panTro1\|chr8_random (40332579-40332797)
	1-315, gnl\|rheMac2\|chr9 (63495821-63495603)
	1-315, gnl\|rn3\|chr15 (4031119-4030902)
	1-315, gnl\|xenTro1\|scaffold_1324 (166797-166588)