Non-Coding RNA Search

Lym1-jns69_D05.f

Sequence:


               
               GGGACATCAGGCTCCGCAGGCCCACGGAGAGCTCATCCTTGGCTGCCTCCTTCTTCGCTT
CGGGCTTAGGCGGAGCAGGGGGAGCAGGAGGGGGAGGCGGCCTAGGACCAGAGGCTGCCT
TTTCTCCCCTCTTGCCTCGAGCCGGCTGCTCGGGGGACCGGAGCCCTCTGCCCGGAGGCT
CCTTGGCGATCCCAGGCTCCTCGCCAGGCAGCACCTTGCTCACCACCTTCCTCACGGCAT
TGGCCACCCTCTTCCGGGACAGGCCCTGGGCCTCCTCGCCCGGGCCCTCCGCTGAGGCAG
CCCCCGGGCCGTTCATGGTGAGTGCGGATGCAGGGCTCTTGGCTCTCTGGGGAGTCTGTG
AGGGGACAGGGCTGGTGGGAGGCTGAGGACTCCTAGGGGGGCCCCCGCTGTCCTTTGAGC
TGCCCTCTAGCTACAGTCACACAAATACAGAGAGACATTAGCATCAGCCCGTGTACCTCC
CGCCCCCGCCCCACACAGAGGAAGTCAGAGGTGTGACCCCACACCTAGCTGGGGAACAGA
CCTTGCAGCCATCCGTGCAACAACACACAGGTGCAAGAGGCCTGCCCCGGAAGCACAGAG
CTATGGGAGGCCAGCGCAGGGTGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACATCAGGCTCCGCAGGCCCACGGAGAGCTCATCCTTGGCTGCCTCCTTCTTCGCTT
CGGGCTTAGGCGGAGCAGGGGGAGCAGGAGGGGGAGGCGGCCTAGGACCAGAGGCTGCCT
TTTCTCCCCTCTTGCCTCGAGCCGGCTGCTCGGGGGACCGGAGCCCTCTGCCCGGAGGCT
CCTTGGCGATCCCAGGCTCCTCGCCAGGCAGCACCTTGCTCACCACCTTCCTCACGGCAT
TGGCCACCCTCTTCCGGGACAGGCCCTGGGCCTCCTCGCCCGGGCCCTCCGCTGAGGCAG
CCCCCGGGCCGTTCATGGTGAGTGCGGATGCAGGGCTCTTGGCTCTCTGGGGAGTCTGTG
AGGGGACAGGGCTGGTGGGAGGCTGAGGACTCCTAGGGGGGCCCCCGCTGTCCTTTGAGC
TGCCCTCTAGCTACAGTCACACAAATACAGAGAGACATTAGCATCAGCCCGTGTACCTCC
CGCCCCCGCCCCACACAGAGGAAGTCAGAGGTGTGACCCCACACCTAGCTGGGGAACAGA
CCTTGCAGCCATCCGTGCAACAACACACAGGTGCAAGAGGCCTGCCCCGGAAGCACAGAG
CTATGGGAGGCCAGCGCAGGGTGCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-276, + strand, RNAz p=0.998712

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-276, + strand, RNAz p=0.998712

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               26-155, + strand, RNAmicro p=0.999889

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               26-155, + strand, RNAmicro p=0.999889

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-594, gnl|bosTau2|chr19 (14028571-14029157)
               

               
               1-594, gnl|Hg17|chr17 (24479256-24479844)
               

               
               1-594, gnl|Mm7|chr11 (77894016-77893418)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-594, gnl|bosTau2|chr19 (14028571-14029157)
               

               
               1-594, gnl|Hg17|chr17 (24479256-24479844)
               

               
               1-594, gnl|Mm7|chr11 (77894016-77893418)

	1-594, gnl\|bosTau2\|chr19 (14028571-14029157)
	1-594, gnl\|Hg17\|chr17 (24479256-24479844)
	1-594, gnl\|Mm7\|chr11 (77894016-77893418)