Non-Coding RNA Search

Lym1-jns71_D09.f

Sequence:


               
               AACCCTCAGAAGTACTTGAAGCACAACTTGAAGATAAAAATGTTTTAAAGACAGCCACAT
AATTACTCCAACAAAAATTTCATTTTCGGTCATCTCCAAAAGGATAACAATATCACACTA
ACATAATTCATCTCTCTCTTTATAAATCACTTGAGCATGGTAGCTCTTGTTTTAATTTTA
ATGCCAGCTCTCATTTTTCATATGAAAATGTGACTCTGCATCTCACCTTTAATAGCAAGC
GTGCAAACACACAGCAAATCAGTTGGTAATTAAAATCACTGGAGAACCAGAACTATCAAA
CGTTGGAGGAACAAAAAGAATAAATGTATGCCAGCAACTGCATGGCGCAAGTGCAATGAG
TGTTCACGACGGCTTATTTTGGCAAGGATCTAATGTAACTCAAACAAGAATTAAGGCATA
TCAGCCCGAGATGTCACTGATAAGGAGGGCCACAAAAGTTGAAAATCATCTTTCATAGGC
TAACTCATTATGCACTTAAAAAAAGATTAGTATGTATATTAATACACTTTACCTCAAGTA
GTTAGTTTTCTTAGTTTAATTCTGGAAAATAGTCTATCACGATCTGCCTATTTGAGAAAG
TATACCATTCTCAAGCAATGTGAACTCTGTGTGACTGTAATTAGACAGGAACTTGATAAC
AATACTCTCTCAGAATCTAGATCTAAAGGACATTTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCCTCAGAAGTACTTGAAGCACAACTTGAAGATAAAAATGTTTTAAAGACAGCCACAT
AATTACTCCAACAAAAATTTCATTTTCGGTCATCTCCAAAAGGATAACAATATCACACTA
ACATAATTCATCTCTCTCTTTATAAATCACTTGAGCATGGTAGCTCTTGTTTTAATTTTA
ATGCCAGCTCTCATTTTTCATATGAAAATGTGACTCTGCATCTCACCTTTAATAGCAAGC
GTGCAAACACACAGCAAATCAGTTGGTAATTAAAATCACTGGAGAACCAGAACTATCAAA
CGTTGGAGGAACAAAAAGAATAAATGTATGCCAGCAACTGCATGGCGCAAGTGCAATGAG
TGTTCACGACGGCTTATTTTGGCAAGGATCTAATGTAACTCAAACAAGAATTAAGGCATA
TCAGCCCGAGATGTCACTGATAAGGAGGGCCACAAAAGTTGAAAATCATCTTTCATAGGC
TAACTCATTATGCACTTAAAAAAAGATTAGTATGTATATTAATACACTTTACCTCAAGTA
GTTAGTTTTCTTAGTTTAATTCTGGAAAATAGTCTATCACGATCTGCCTATTTGAGAAAG
TATACCATTCTCAAGCAATGTGAACTCTGTGTGACTGTAATTAGACAGGAACTTGATAAC
AATACTCTCTCAGAATCTAGATCTAAAGGACATTTAATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               226-379, + strand, RNAz p=0.709133
               

               
               581-698, + strand, RNAz p=0.609386

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               226-379, + strand, RNAz p=0.709133
               

               
               581-698, + strand, RNAz p=0.609386

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               69-443, gnl|bosTau2|chr17 (6151841-6152221)
               

               
               69-443, gnl|Hg17|chr4 (147768785-147769132)
               


               
               571-698, gnl|bosTau2|chr17 (6152436-6152564)
               

               
               571-698, gnl|canFam2|chr15 (47940509-47940733)
               

               
               571-698, gnl|dasNov1|scaffold_25592 (42654-42475)
               

               
               571-698, gnl|hg17|chr4 (147769144-147769379)
               

               
               571-698, gnl|Hg17|chr4 (147769255-147769401)
               

               
               571-698, gnl|mm7|chr8 (77081712-77081580)
               

               
               571-698, gnl|oryCun1|scaffold_205211 (17995-18204)
               

               
               571-698, gnl|panTro1|chr3 (165017451-165017685)
               

               
               571-698, gnl|rheMac2|chr5 (138633847-138634080)
               

               
               571-698, gnl|rn3|chr19 (31282982-31283198)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-443, gnl|bosTau2|chr17 (6151841-6152221)
               

               
               69-443, gnl|Hg17|chr4 (147768785-147769132)
               


               
               571-698, gnl|bosTau2|chr17 (6152436-6152564)
               

               
               571-698, gnl|canFam2|chr15 (47940509-47940733)
               

               
               571-698, gnl|dasNov1|scaffold_25592 (42654-42475)
               

               
               571-698, gnl|hg17|chr4 (147769144-147769379)
               

               
               571-698, gnl|Hg17|chr4 (147769255-147769401)
               

               
               571-698, gnl|mm7|chr8 (77081712-77081580)
               

               
               571-698, gnl|oryCun1|scaffold_205211 (17995-18204)
               

               
               571-698, gnl|panTro1|chr3 (165017451-165017685)
               

               
               571-698, gnl|rheMac2|chr5 (138633847-138634080)
               

               
               571-698, gnl|rn3|chr19 (31282982-31283198)

	226-379, + strand, RNAz p=0.709133
	581-698, + strand, RNAz p=0.609386

	69-443, gnl\|bosTau2\|chr17 (6151841-6152221)
	69-443, gnl\|Hg17\|chr4 (147768785-147769132)

	571-698, gnl\|bosTau2\|chr17 (6152436-6152564)
	571-698, gnl\|canFam2\|chr15 (47940509-47940733)
	571-698, gnl\|dasNov1\|scaffold_25592 (42654-42475)
	571-698, gnl\|hg17\|chr4 (147769144-147769379)
	571-698, gnl\|Hg17\|chr4 (147769255-147769401)
	571-698, gnl\|mm7\|chr8 (77081712-77081580)
	571-698, gnl\|oryCun1\|scaffold_205211 (17995-18204)
	571-698, gnl\|panTro1\|chr3 (165017451-165017685)
	571-698, gnl\|rheMac2\|chr5 (138633847-138634080)
	571-698, gnl\|rn3\|chr19 (31282982-31283198)