Non-Coding RNA Search

Lym1-jns76_F02.f

Sequence:


               
               TGCGATCTAGAACcccactgtggctcagtggattaagaacctgacacggtgtctgtgagg
atgcggattcatccctggcctcactcagtgggttaaggatctggcattgctacaagctgt
ggcgtgggacacagatgtggctcggatctggtgatgctgtggctgtggctgtggctgtga
catagacctgcaactgtagctctgatacacccttagcctgggaacttccatatgccgcag
acgcggccATAAATTAAACAAACAGGAAAACAAAACAAAAACTAAAGGAGGCGTACCATA
TGAACCACCCCAGAGTTCAGTGGCTTGAGATGATACCCATTTACTGAGCTCTCAGTTCTG
CAATCTGGAAACATAGGCTGGGCTCAGCTGGGTGGTTCTTCTGGTTGCAGCTGGGTTTAT
TCACACATTGGATGGACGTCAGTCGCAGGTCAGCAGGGAGCTCTATGGGCACCTTTGTTC
TTTGCCTGGTGGCCTTCTCCTCCAACAGGCTAGTCTGGGTTGTTCACATGGTGGTGGCCA
GGGAACGGGGTGGTACAGCTCCCCAGGACTAGCAGCAGTGGGGAGCTGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGATCTAGAACcccactgtggctcagtggattaagaacctgacacggtgtctgtgagg
atgcggattcatccctggcctcactcagtgggttaaggatctggcattgctacaagctgt
ggcgtgggacacagatgtggctcggatctggtgatgctgtggctgtggctgtggctgtga
catagacctgcaactgtagctctgatacacccttagcctgggaacttccatatgccgcag
acgcggccATAAATTAAACAAACAGGAAAACAAAACAAAAACTAAAGGAGGCGTACCATA
TGAACCACCCCAGAGTTCAGTGGCTTGAGATGATACCCATTTACTGAGCTCTCAGTTCTG
CAATCTGGAAACATAGGCTGGGCTCAGCTGGGTGGTTCTTCTGGTTGCAGCTGGGTTTAT
TCACACATTGGATGGACGTCAGTCGCAGGTCAGCAGGGAGCTCTATGGGCACCTTTGTTC
TTTGCCTGGTGGCCTTCTCCTCCAACAGGCTAGTCTGGGTTGTTCACATGGTGGTGGCCA
GGGAACGGGGTGGTACAGCTCCCCAGGACTAGCAGCAGTGGGGAGCTGTGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               313-420, - strand, RNAz p=0.650454
               

               
               475-592, + strand, RNAz p=0.899627

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-420, - strand, RNAz p=0.650454
               

               
               475-592, + strand, RNAz p=0.899627

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               313-592, gnl|bosTau2|chr18 (39887620-39887349)
               

               
               313-592, gnl|canFam2|chr1 (120323760-120323512)
               

               
               313-592, gnl|dasNov1|scaffold_100962 (3030-2795)
               

               
               313-592, gnl|hg17|chr19 (40349181-40349430)
               

               
               313-592, gnl|Hg17|chr19 (40349208-40350010)
               

               
               313-592, gnl|mm7|chr7 (27974876-27974725)
               

               
               313-592, gnl|panTro1|chr20_random (14969059-14968810)
               

               
               313-592, gnl|rheMac2|chr19 (41663361-41663610)
               

               
               313-592, gnl|rn3|chr1 (86156848-86156672)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               313-592, gnl|bosTau2|chr18 (39887620-39887349)
               

               
               313-592, gnl|canFam2|chr1 (120323760-120323512)
               

               
               313-592, gnl|dasNov1|scaffold_100962 (3030-2795)
               

               
               313-592, gnl|hg17|chr19 (40349181-40349430)
               

               
               313-592, gnl|Hg17|chr19 (40349208-40350010)
               

               
               313-592, gnl|mm7|chr7 (27974876-27974725)
               

               
               313-592, gnl|panTro1|chr20_random (14969059-14968810)
               

               
               313-592, gnl|rheMac2|chr19 (41663361-41663610)
               

               
               313-592, gnl|rn3|chr1 (86156848-86156672)

	313-420, - strand, RNAz p=0.650454
	475-592, + strand, RNAz p=0.899627

	313-592, gnl\|bosTau2\|chr18 (39887620-39887349)
	313-592, gnl\|canFam2\|chr1 (120323760-120323512)
	313-592, gnl\|dasNov1\|scaffold_100962 (3030-2795)
	313-592, gnl\|hg17\|chr19 (40349181-40349430)
	313-592, gnl\|Hg17\|chr19 (40349208-40350010)
	313-592, gnl\|mm7\|chr7 (27974876-27974725)
	313-592, gnl\|panTro1\|chr20_random (14969059-14968810)
	313-592, gnl\|rheMac2\|chr19 (41663361-41663610)
	313-592, gnl\|rn3\|chr1 (86156848-86156672)