Non-Coding RNA Search

Lym1-jns88_C06.f

Sequence:


               
               CTAATTTCTTCTTTTTCTTTCTAGTATATTTTTTCTGTCAGGGCTTCCCTCACTATATAA
GTTGGCAGAATCTCAAATATGTGATTGTACCTTTTTTAAGCACAATCTATATTTTATGAC
ACAGTCTATGTCTATGTCTCTTTAAGATGCATCAGAATCATCTGAAAGGCTTAATTTAAA
ACAGATTGAAATATCCACTCCCCCCCACACACATCCATCCCCTCCCCTCAAAGATTTTGA
TATTTAGGGTGGGGGCTAAGAGTTTGCAATTCCAACAAGTTCTTTAGTGAAGCTGCTGTT
GCCAGCAGCTAAGGATCACATTTTAAGAACATTTGCCATGAAAAGAAAAGACTTTTTCTT
GGAAACAGTTCAGTTCATTTGACTGATAAGTTTAGCATAGAGCCAACAGCTTCTGGTCAT
TATTTATCTCCTGTAATGCTGAGTTATGGATTTAGCACAGCTGAAGTTGTTAACTTTGTG
CACTGGCAGCTCCAGGACACTGAACTCATCTCTCCTCCAGAAAACGAAGGACAACCATTC
ATATGCAAACATTCACCCTGCTCTGGGAAGAGGTATTGACAAGAAAGGATGTGACTCAAG
TCCTGTCGATATATTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAATTTCTTCTTTTTCTTTCTAGTATATTTTTTCTGTCAGGGCTTCCCTCACTATATAA
GTTGGCAGAATCTCAAATATGTGATTGTACCTTTTTTAAGCACAATCTATATTTTATGAC
ACAGTCTATGTCTATGTCTCTTTAAGATGCATCAGAATCATCTGAAAGGCTTAATTTAAA
ACAGATTGAAATATCCACTCCCCCCCACACACATCCATCCCCTCCCCTCAAAGATTTTGA
TATTTAGGGTGGGGGCTAAGAGTTTGCAATTCCAACAAGTTCTTTAGTGAAGCTGCTGTT
GCCAGCAGCTAAGGATCACATTTTAAGAACATTTGCCATGAAAAGAAAAGACTTTTTCTT
GGAAACAGTTCAGTTCATTTGACTGATAAGTTTAGCATAGAGCCAACAGCTTCTGGTCAT
TATTTATCTCCTGTAATGCTGAGTTATGGATTTAGCACAGCTGAAGTTGTTAACTTTGTG
CACTGGCAGCTCCAGGACACTGAACTCATCTCTCCTCCAGAAAACGAAGGACAACCATTC
ATATGCAAACATTCACCCTGCTCTGGGAAGAGGTATTGACAAGAAAGGATGTGACTCAAG
TCCTGTCGATATATTTTTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               265-365, + strand, RNAz p=0.776225

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-365, + strand, RNAz p=0.776225

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               265-615, gnl|bosTau2|chr27 (13349780-13350124)
               

               
               265-615, gnl|canFam2|chr16 (42462298-42462869)
               

               
               265-615, gnl|dasNov1|scaffold_39769 (10261-9711)
               

               
               265-615, gnl|hg17|chr8 (16082297-16082864)
               

               
               265-615, gnl|Hg17|chr8 (16082292-16082640)
               

               
               265-615, gnl|mm7|chr8 (38425815-38426427)
               

               
               265-615, gnl|oryCun1|scaffold_182456 (42908-42398)
               

               
               265-615, gnl|panTro1|chr7 (16827236-16827803)
               

               
               265-615, gnl|rheMac2|chr8 (16047546-16048112)
               

               
               265-615, gnl|rn3|chr16 (56270801-56270241)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               265-615, gnl|bosTau2|chr27 (13349780-13350124)
               

               
               265-615, gnl|canFam2|chr16 (42462298-42462869)
               

               
               265-615, gnl|dasNov1|scaffold_39769 (10261-9711)
               

               
               265-615, gnl|hg17|chr8 (16082297-16082864)
               

               
               265-615, gnl|Hg17|chr8 (16082292-16082640)
               

               
               265-615, gnl|mm7|chr8 (38425815-38426427)
               

               
               265-615, gnl|oryCun1|scaffold_182456 (42908-42398)
               

               
               265-615, gnl|panTro1|chr7 (16827236-16827803)
               

               
               265-615, gnl|rheMac2|chr8 (16047546-16048112)
               

               
               265-615, gnl|rn3|chr16 (56270801-56270241)

	265-615, gnl\|bosTau2\|chr27 (13349780-13350124)
	265-615, gnl\|canFam2\|chr16 (42462298-42462869)
	265-615, gnl\|dasNov1\|scaffold_39769 (10261-9711)
	265-615, gnl\|hg17\|chr8 (16082297-16082864)
	265-615, gnl\|Hg17\|chr8 (16082292-16082640)
	265-615, gnl\|mm7\|chr8 (38425815-38426427)
	265-615, gnl\|oryCun1\|scaffold_182456 (42908-42398)
	265-615, gnl\|panTro1\|chr7 (16827236-16827803)
	265-615, gnl\|rheMac2\|chr8 (16047546-16048112)
	265-615, gnl\|rn3\|chr16 (56270801-56270241)