Non-Coding RNA Search

Lym1-jns91_D04.f

Sequence:


               
               CCCCTGCCTCCCTGCCCGCCCCGCCACTGCCGCCCCGCCGGCGGGCCTCGGTGCCCAACG
GGCCTCTGGACTCGGTCCCCTTCACCCAGCTGCACGAGTGGTACGGACAGGAGGTCAGGG
CGCTGAGGAGCCAGTGGCTCAGGAGCCAGGCCCAGCTCTGAGGATGGGGTGAGGGCCTGA
ACTGCGGGGTAGTGGTTAAGGCCAGCCTTGAGTCAGCAGGGGTCCTGGTTCTGGTGCCAC
TCCAGCCCCAGACCTTGCTTGGACAAGCCCAGCCCTGAGACTCTGGGGGACCTGGTCCTG
AGGGAAGGAGTGGCCAGGGTCGGCCCTCAGGTCCCTGCCCGACCTGCTTTTGGAGACTCA
GGCTCTGAGAAGACGCTGAGTTCTGAGGAGTACTCTGGGACCTCAGAGGAGTAACTCAGA
GAAAGCCCACCTTGAGGGGGCCATCGTGTCCCGTTCTCAGGAGAATCCAGACCCGGAATG
AGCCTCAAGCAGCTGGAGGGCTGGTTTCATGGGAACTGTAGCCCCAAACCCAGACCTGCA
GGTGCCCTGGTCTCCTGGCTGGGAGTCACCCCAGGAGGCTTGTTGCTGGCAGCAGGCCTC
GGCTGGGGTGACTGGGACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTGCCTCCCTGCCCGCCCCGCCACTGCCGCCCCGCCGGCGGGCCTCGGTGCCCAACG
GGCCTCTGGACTCGGTCCCCTTCACCCAGCTGCACGAGTGGTACGGACAGGAGGTCAGGG
CGCTGAGGAGCCAGTGGCTCAGGAGCCAGGCCCAGCTCTGAGGATGGGGTGAGGGCCTGA
ACTGCGGGGTAGTGGTTAAGGCCAGCCTTGAGTCAGCAGGGGTCCTGGTTCTGGTGCCAC
TCCAGCCCCAGACCTTGCTTGGACAAGCCCAGCCCTGAGACTCTGGGGGACCTGGTCCTG
AGGGAAGGAGTGGCCAGGGTCGGCCCTCAGGTCCCTGCCCGACCTGCTTTTGGAGACTCA
GGCTCTGAGAAGACGCTGAGTTCTGAGGAGTACTCTGGGACCTCAGAGGAGTAACTCAGA
GAAAGCCCACCTTGAGGGGGCCATCGTGTCCCGTTCTCAGGAGAATCCAGACCCGGAATG
AGCCTCAAGCAGCTGGAGGGCTGGTTTCATGGGAACTGTAGCCCCAAACCCAGACCTGCA
GGTGCCCTGGTCTCCTGGCTGGGAGTCACCCCAGGAGGCTTGTTGCTGGCAGCAGGCCTC
GGCTGGGGTGACTGGGACATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               476-618, + strand, RNAz p=0.992901

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               476-618, + strand, RNAz p=0.992901

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               19-162, gnl|bosTau2|chr17 (29463114-29463257)
               

               
               19-162, gnl|canFam2|chr26 (12022484-12022833)
               

               
               19-162, gnl|Hg17|chr12 (110263344-110263134)
               

               
               19-162, gnl|hg17|chr8 (50052826-50053069)
               

               
               19-162, gnl|Mm7|chr5 (121087356-121087499)
               

               
               19-162, gnl|panTro1|chr7 (51636540-51636772)
               

               
               19-162, gnl|rheMac2|chr8 (51495925-51496265)
               


               
               264-618, gnl|bosTau2|chr17 (29463242-29463593)
               

               
               264-618, gnl|Hg17|chr12 (110263216-110262834)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-162, gnl|bosTau2|chr17 (29463114-29463257)
               

               
               19-162, gnl|canFam2|chr26 (12022484-12022833)
               

               
               19-162, gnl|Hg17|chr12 (110263344-110263134)
               

               
               19-162, gnl|hg17|chr8 (50052826-50053069)
               

               
               19-162, gnl|Mm7|chr5 (121087356-121087499)
               

               
               19-162, gnl|panTro1|chr7 (51636540-51636772)
               

               
               19-162, gnl|rheMac2|chr8 (51495925-51496265)
               


               
               264-618, gnl|bosTau2|chr17 (29463242-29463593)
               

               
               264-618, gnl|Hg17|chr12 (110263216-110262834)

	19-162, gnl\|bosTau2\|chr17 (29463114-29463257)
	19-162, gnl\|canFam2\|chr26 (12022484-12022833)
	19-162, gnl\|Hg17\|chr12 (110263344-110263134)
	19-162, gnl\|hg17\|chr8 (50052826-50053069)
	19-162, gnl\|Mm7\|chr5 (121087356-121087499)
	19-162, gnl\|panTro1\|chr7 (51636540-51636772)
	19-162, gnl\|rheMac2\|chr8 (51495925-51496265)

	264-618, gnl\|bosTau2\|chr17 (29463242-29463593)
	264-618, gnl\|Hg17\|chr12 (110263216-110262834)