Non-Coding RNA Search

Lym1-jns92_H09.f

Sequence:


               
               CCAACCAGAACATTTAAATCATGCACATGCTCCAACAGTAAGGCATTATTAAGTCTGTTA
GGGTGTGTTTCAATGGTATATTTGGCTAAAAAAAACAAGAGGGCTTTTTGAGGCATGGGA
GGTAAAAAGGTTTGTTCAGCTGTAATCATTATACATCAGTGACTTCCAAATCTCTTTCCC
TAGCAGTCCAAAGTGATTTTTTTGCTTTTGCTTAATATCTCCACCCTGTGCCAGCATATG
TGCCCATATGTTGGTGGGGCCTCATGCTGGGCTGGGCTGGGGTGGAAAGGTGGGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACCAGAACATTTAAATCATGCACATGCTCCAACAGTAAGGCATTATTAAGTCTGTTA
GGGTGTGTTTCAATGGTATATTTGGCTAAAAAAAACAAGAGGGCTTTTTGAGGCATGGGA
GGTAAAAAGGTTTGTTCAGCTGTAATCATTATACATCAGTGACTTCCAAATCTCTTTCCC
TAGCAGTCCAAAGTGATTTTTTTGCTTTTGCTTAATATCTCCACCCTGTGCCAGCATATG
TGCCCATATGTTGGTGGGGCCTCATGCTGGGCTGGGCTGGGGTGGAAAGGTGGGGAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               180-296, - strand, RNAz p=0.993262
               

               
               184-296, - strand, RNAz p=0.95626

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-296, - strand, RNAz p=0.993262
               

               
               184-296, - strand, RNAz p=0.95626

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-296, gnl|bosTau2|chr7 (59174567-59174871)
               

               
               3-296, gnl|canFam2|chr3 (17141429-17141229)
               

               
               3-296, gnl|dasNov1|scaffold_6986 (50113-50334)
               

               
               3-296, gnl|echTel1|scaffold_240132 (458-247)
               

               
               3-296, gnl|hg17|chr5 (94642112-94642332)
               

               
               3-296, gnl|Hg17|chr5 (94642131-94642435)
               

               
               3-296, gnl|loxAfr1|scaffold_4059 (100396-100172)
               

               
               3-296, gnl|mm7|chr13 (73400790-73400611)
               

               
               3-296, gnl|Mm7|chr13 (73400769-73400346)
               

               
               3-296, gnl|monDom2|scaffold_20 (2768307-2768079)
               

               
               3-296, gnl|oryCun1|scaffold_117937 (15339-15117)
               

               
               3-296, gnl|rheMac2|chr6 (91514695-91514915)
               

               
               3-296, gnl|rn3|chr2 (3677020-3676841)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-296, gnl|bosTau2|chr7 (59174567-59174871)
               

               
               3-296, gnl|canFam2|chr3 (17141429-17141229)
               

               
               3-296, gnl|dasNov1|scaffold_6986 (50113-50334)
               

               
               3-296, gnl|echTel1|scaffold_240132 (458-247)
               

               
               3-296, gnl|hg17|chr5 (94642112-94642332)
               

               
               3-296, gnl|Hg17|chr5 (94642131-94642435)
               

               
               3-296, gnl|loxAfr1|scaffold_4059 (100396-100172)
               

               
               3-296, gnl|mm7|chr13 (73400790-73400611)
               

               
               3-296, gnl|Mm7|chr13 (73400769-73400346)
               

               
               3-296, gnl|monDom2|scaffold_20 (2768307-2768079)
               

               
               3-296, gnl|oryCun1|scaffold_117937 (15339-15117)
               

               
               3-296, gnl|rheMac2|chr6 (91514695-91514915)
               

               
               3-296, gnl|rn3|chr2 (3677020-3676841)

	180-296, - strand, RNAz p=0.993262
	184-296, - strand, RNAz p=0.95626

	3-296, gnl\|bosTau2\|chr7 (59174567-59174871)
	3-296, gnl\|canFam2\|chr3 (17141429-17141229)
	3-296, gnl\|dasNov1\|scaffold_6986 (50113-50334)
	3-296, gnl\|echTel1\|scaffold_240132 (458-247)
	3-296, gnl\|hg17\|chr5 (94642112-94642332)
	3-296, gnl\|Hg17\|chr5 (94642131-94642435)
	3-296, gnl\|loxAfr1\|scaffold_4059 (100396-100172)
	3-296, gnl\|mm7\|chr13 (73400790-73400611)
	3-296, gnl\|Mm7\|chr13 (73400769-73400346)
	3-296, gnl\|monDom2\|scaffold_20 (2768307-2768079)
	3-296, gnl\|oryCun1\|scaffold_117937 (15339-15117)
	3-296, gnl\|rheMac2\|chr6 (91514695-91514915)
	3-296, gnl\|rn3\|chr2 (3677020-3676841)