Non-Coding RNA Search

Lym1-jns96_A07.f

Sequence:


               
               GCGGAAGCCAGGGCGGCAGCGGCACTTAAAGCCGATCTTGAGGTCCTCGCAGTCCTGGCT
GCAGCCGCTGAGCTTGTGGCTGAGACACTCATTGACGTGGCAGCCGCGCTCATCTGAGCC
ATCACCGCAGTCATCCTGGCCGTTGCACAGCAGTGCCTCGGCCACACAGCGCCCGCTGCT
GCACAGGAACTGCGAGGAGGCGTTGCACTTGTGCTCTGGGCTGGTGCAATGCGGGTTCTT
GGGGGCCTCGTCACTCTGGTCATGGCAGTCATTTTCACCATCACACTCCCACTGGCGGGA
GCTCAAGCAGCGGCCGTTGGCGCATCGGAACTCATTGGGGCCGCAGGTCGGGTACTCACA
CTCGGGGGACTCGTCAGAACCGTCGGCGCAGTCACGGTCGTGGTCACACATGAAATGCTT
GGGGATGCACTGGCGGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAAGCCAGGGCGGCAGCGGCACTTAAAGCCGATCTTGAGGTCCTCGCAGTCCTGGCT
GCAGCCGCTGAGCTTGTGGCTGAGACACTCATTGACGTGGCAGCCGCGCTCATCTGAGCC
ATCACCGCAGTCATCCTGGCCGTTGCACAGCAGTGCCTCGGCCACACAGCGCCCGCTGCT
GCACAGGAACTGCGAGGAGGCGTTGCACTTGTGCTCTGGGCTGGTGCAATGCGGGTTCTT
GGGGGCCTCGTCACTCTGGTCATGGCAGTCATTTTCACCATCACACTCCCACTGGCGGGA
GCTCAAGCAGCGGCCGTTGGCGCATCGGAACTCATTGGGGCCGCAGGTCGGGTACTCACA
CTCGGGGGACTCGTCAGAACCGTCGGCGCAGTCACGGTCGTGGTCACACATGAAATGCTT
GGGGATGCACTGGCGGTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               64-223, - strand, RNAz p=0.600685

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               64-223, - strand, RNAz p=0.600685

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               153-247, - strand, RNAmicro p=0.951977

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               153-247, - strand, RNAmicro p=0.951977

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-226, gnl|bosTau2|chr5 (32491990-32492191)
               

               
               25-226, gnl|Hg17|chr12 (55876327-55876126)
               

               
               25-226, gnl|Mm7|chr10 (127057042-127057276)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-226, gnl|bosTau2|chr5 (32491990-32492191)
               

               
               25-226, gnl|Hg17|chr12 (55876327-55876126)
               

               
               25-226, gnl|Mm7|chr10 (127057042-127057276)

	25-226, gnl\|bosTau2\|chr5 (32491990-32492191)
	25-226, gnl\|Hg17\|chr12 (55876327-55876126)
	25-226, gnl\|Mm7\|chr10 (127057042-127057276)