Non-Coding RNA Search

Lym2-sn11_H07.f

Sequence:


               
               CTCACTTTTTTTTTTAATCAAAACAATCCCATTAATTAGCATATTCCCAAATGGAAGATA
AGTGGACCACATTCCTAATTGCATGAACTCTGGCATTCCCGTGTCCCACAAAAAAAAAAA
AAAAAAAAAAAAAATGTGGACACAAATCTAGGGCCAAATGATTTAACACCAGATCAACAA
ATATGTTTTGGCGAATGTATATTAAGGATGGGATTGTGTTACTTCAAAGTCTGTACCCTG
GGTAACCCATTAAAGCAAATAGGTTTACTGCAGAATTTCAAGATTAATTAATAAAAACTT
TATTCCTTTGATTAAACAGAGGGTTTTTTTTTTTTCCCAGTTGTCACTTTGAGAACTTCT
AGTTCCTACCTAAGCCACTTTAAAAGAACAAAGTCGGACCGTACATGCACTCCCAAGTTG
AATTTTCCCCATGCATTTCATGCACTGGGCTTGAAAGGTGACAGCCAGCCTGTGCGTGAC
CTCCCGAACACAGCAGCCTGGCAGCCATTAGGACAGAGTTGTTTTCTTAAATTATACAAA
CCTCCAACATTAAATTGCTATGTCTGACATAAATATTATCCCCTTCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACTTTTTTTTTTAATCAAAACAATCCCATTAATTAGCATATTCCCAAATGGAAGATA
AGTGGACCACATTCCTAATTGCATGAACTCTGGCATTCCCGTGTCCCACAAAAAAAAAAA
AAAAAAAAAAAAAATGTGGACACAAATCTAGGGCCAAATGATTTAACACCAGATCAACAA
ATATGTTTTGGCGAATGTATATTAAGGATGGGATTGTGTTACTTCAAAGTCTGTACCCTG
GGTAACCCATTAAAGCAAATAGGTTTACTGCAGAATTTCAAGATTAATTAATAAAAACTT
TATTCCTTTGATTAAACAGAGGGTTTTTTTTTTTTCCCAGTTGTCACTTTGAGAACTTCT
AGTTCCTACCTAAGCCACTTTAAAAGAACAAAGTCGGACCGTACATGCACTCCCAAGTTG
AATTTTCCCCATGCATTTCATGCACTGGGCTTGAAAGGTGACAGCCAGCCTGTGCGTGAC
CTCCCGAACACAGCAGCCTGGCAGCCATTAGGACAGAGTTGTTTTCTTAAATTATACAAA
CCTCCAACATTAAATTGCTATGTCTGACATAAATATTATCCCCTTCTAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               39-147, - strand, RNAz p=0.628869

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-147, - strand, RNAz p=0.628869

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               11-211, gnl|bosTau2|chr9 (39333265-39333461)
               

               
               11-211, gnl|canFam2|chr1 (72206457-72206703)
               

               
               11-211, gnl|echTel1|scaffold_311237 (28266-28061)
               

               
               11-211, gnl|hg17|chr6 (131242379-131242662)
               

               
               11-211, gnl|Hg17|chr6 (131242449-131242639)
               

               
               11-211, gnl|loxAfr1|scaffold_5372 (65364-65130)
               

               
               11-211, gnl|mm7|chr10 (25246387-25246112)
               

               
               11-211, gnl|Mm7|chr10 (25246314-25246099)
               

               
               11-211, gnl|monDom2|scaffold_0 (81227099-81226852)
               

               
               11-211, gnl|oryCun1|scaffold_199067 (160542-160813)
               

               
               11-211, gnl|panTro1|chr5 (133896989-133897272)
               

               
               11-211, gnl|rheMac2|chr4 (133006277-133006010)
               

               
               11-211, gnl|rn3|chr1 (20372455-20372719)
               


               
               247-589, gnl|bosTau2|chr9 (39333469-39333828)
               

               
               247-589, gnl|Hg17|chr6 (131242675-131243024)
               

               
               247-589, gnl|Mm7|chr10 (25246097-25245768)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-211, gnl|bosTau2|chr9 (39333265-39333461)
               

               
               11-211, gnl|canFam2|chr1 (72206457-72206703)
               

               
               11-211, gnl|echTel1|scaffold_311237 (28266-28061)
               

               
               11-211, gnl|hg17|chr6 (131242379-131242662)
               

               
               11-211, gnl|Hg17|chr6 (131242449-131242639)
               

               
               11-211, gnl|loxAfr1|scaffold_5372 (65364-65130)
               

               
               11-211, gnl|mm7|chr10 (25246387-25246112)
               

               
               11-211, gnl|Mm7|chr10 (25246314-25246099)
               

               
               11-211, gnl|monDom2|scaffold_0 (81227099-81226852)
               

               
               11-211, gnl|oryCun1|scaffold_199067 (160542-160813)
               

               
               11-211, gnl|panTro1|chr5 (133896989-133897272)
               

               
               11-211, gnl|rheMac2|chr4 (133006277-133006010)
               

               
               11-211, gnl|rn3|chr1 (20372455-20372719)
               


               
               247-589, gnl|bosTau2|chr9 (39333469-39333828)
               

               
               247-589, gnl|Hg17|chr6 (131242675-131243024)
               

               
               247-589, gnl|Mm7|chr10 (25246097-25245768)

	11-211, gnl\|bosTau2\|chr9 (39333265-39333461)
	11-211, gnl\|canFam2\|chr1 (72206457-72206703)
	11-211, gnl\|echTel1\|scaffold_311237 (28266-28061)
	11-211, gnl\|hg17\|chr6 (131242379-131242662)
	11-211, gnl\|Hg17\|chr6 (131242449-131242639)
	11-211, gnl\|loxAfr1\|scaffold_5372 (65364-65130)
	11-211, gnl\|mm7\|chr10 (25246387-25246112)
	11-211, gnl\|Mm7\|chr10 (25246314-25246099)
	11-211, gnl\|monDom2\|scaffold_0 (81227099-81226852)
	11-211, gnl\|oryCun1\|scaffold_199067 (160542-160813)
	11-211, gnl\|panTro1\|chr5 (133896989-133897272)
	11-211, gnl\|rheMac2\|chr4 (133006277-133006010)
	11-211, gnl\|rn3\|chr1 (20372455-20372719)

	247-589, gnl\|bosTau2\|chr9 (39333469-39333828)
	247-589, gnl\|Hg17\|chr6 (131242675-131243024)
	247-589, gnl\|Mm7\|chr10 (25246097-25245768)