Non-Coding RNA Search

Lym2-sn20_E12.f

Sequence:


               
               ATTTTTGAGTATATTTTATTTACAATTATTTATTCTTTCTTGAAATCCTTTAGAATAGCC
TTGATTAAAATCATGACATAAAATAATCTTCCCTGTATTTGTTACATATGGCACTATAAT
AACTTAACACTTTATATAAATATGTTTCATTGATGCACAAATGGAAGAAGCACCCTTTGC
CAAAAGCAGTACAGTAACTTAGTTCCATTTGGCTATGGTAGCAGTTTCAAAAATGACCAT
GAGATGGTGCTGTGCTAAAGTAGATTAAGTGCTTTAAACTGAGCGTGTTCCCTAAAGATG
GCACTTAATTCTTTTCTTTAAATGTAGAAGAATCTACCGTTCAACTTAACATAGAATAAA
GTTGGTCACTCTATTTTAATAATATAAACTAGGAGTGAGTCCTTTAATCTCAGATCCATA
AATTAGTCAAGGACTGTATTTCGCTGGGGTGAGGGGGTGTGTTTAAAAAGCTTTAGTAGT
CAGAAAGTCCCCAGACTAATTAAGAAGCCCAAAGGTACCATTTTATTTAGCATCAATCAA
CCACATATAAGGAGCATGGTTCCCCCCACCCCTGTGTTAAAGTCGTTCCACAAAATTAGG
TCAACTTGCAGTTTATTTAAAGAGCTGACACCTCTGTTACATTTTAATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTGAGTATATTTTATTTACAATTATTTATTCTTTCTTGAAATCCTTTAGAATAGCC
TTGATTAAAATCATGACATAAAATAATCTTCCCTGTATTTGTTACATATGGCACTATAAT
AACTTAACACTTTATATAAATATGTTTCATTGATGCACAAATGGAAGAAGCACCCTTTGC
CAAAAGCAGTACAGTAACTTAGTTCCATTTGGCTATGGTAGCAGTTTCAAAAATGACCAT
GAGATGGTGCTGTGCTAAAGTAGATTAAGTGCTTTAAACTGAGCGTGTTCCCTAAAGATG
GCACTTAATTCTTTTCTTTAAATGTAGAAGAATCTACCGTTCAACTTAACATAGAATAAA
GTTGGTCACTCTATTTTAATAATATAAACTAGGAGTGAGTCCTTTAATCTCAGATCCATA
AATTAGTCAAGGACTGTATTTCGCTGGGGTGAGGGGGTGTGTTTAAAAAGCTTTAGTAGT
CAGAAAGTCCCCAGACTAATTAAGAAGCCCAAAGGTACCATTTTATTTAGCATCAATCAA
CCACATATAAGGAGCATGGTTCCCCCCACCCCTGTGTTAAAGTCGTTCCACAAAATTAGG
TCAACTTGCAGTTTATTTAAAGAGCTGACACCTCTGTTACATTTTAATCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               311-430, - strand, RNAz p=0.521588

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-430, - strand, RNAz p=0.521588

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-477, gnl|bosTau2|chr12 (7445270-7445730)
               

               
               1-477, gnl|canFam2|chr22 (7455763-7455097)
               

               
               1-477, gnl|dasNov1|scaffold_96505 (2734-3380)
               

               
               1-477, gnl|echTel1|scaffold_288340 (46888-46312)
               

               
               1-477, gnl|hg17|chr13 (46303552-46304166)
               

               
               1-477, gnl|Hg17|chr13 (46303685-46304119)
               

               
               1-477, gnl|loxAfr1|scaffold_5825 (6046-6660)
               

               
               1-477, gnl|mm7|chr14 (69391301-69390715)
               

               
               1-477, gnl|Mm7|chr14 (69391191-69390769)
               

               
               1-477, gnl|monDom2|scaffold_15 (60837598-60836934)
               

               
               1-477, gnl|oryCun1|scaffold_211296 (113711-114326)
               

               
               1-477, gnl|panTro1|chr14_random (12337717-12338332)
               

               
               1-477, gnl|rheMac2|chr17 (25650558-25651191)
               

               
               1-477, gnl|rn3|chr15 (55551104-55550521)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-477, gnl|bosTau2|chr12 (7445270-7445730)
               

               
               1-477, gnl|canFam2|chr22 (7455763-7455097)
               

               
               1-477, gnl|dasNov1|scaffold_96505 (2734-3380)
               

               
               1-477, gnl|echTel1|scaffold_288340 (46888-46312)
               

               
               1-477, gnl|hg17|chr13 (46303552-46304166)
               

               
               1-477, gnl|Hg17|chr13 (46303685-46304119)
               

               
               1-477, gnl|loxAfr1|scaffold_5825 (6046-6660)
               

               
               1-477, gnl|mm7|chr14 (69391301-69390715)
               

               
               1-477, gnl|Mm7|chr14 (69391191-69390769)
               

               
               1-477, gnl|monDom2|scaffold_15 (60837598-60836934)
               

               
               1-477, gnl|oryCun1|scaffold_211296 (113711-114326)
               

               
               1-477, gnl|panTro1|chr14_random (12337717-12338332)
               

               
               1-477, gnl|rheMac2|chr17 (25650558-25651191)
               

               
               1-477, gnl|rn3|chr15 (55551104-55550521)

	1-477, gnl\|bosTau2\|chr12 (7445270-7445730)
	1-477, gnl\|canFam2\|chr22 (7455763-7455097)
	1-477, gnl\|dasNov1\|scaffold_96505 (2734-3380)
	1-477, gnl\|echTel1\|scaffold_288340 (46888-46312)
	1-477, gnl\|hg17\|chr13 (46303552-46304166)
	1-477, gnl\|Hg17\|chr13 (46303685-46304119)
	1-477, gnl\|loxAfr1\|scaffold_5825 (6046-6660)
	1-477, gnl\|mm7\|chr14 (69391301-69390715)
	1-477, gnl\|Mm7\|chr14 (69391191-69390769)
	1-477, gnl\|monDom2\|scaffold_15 (60837598-60836934)
	1-477, gnl\|oryCun1\|scaffold_211296 (113711-114326)
	1-477, gnl\|panTro1\|chr14_random (12337717-12338332)
	1-477, gnl\|rheMac2\|chr17 (25650558-25651191)
	1-477, gnl\|rn3\|chr15 (55551104-55550521)