Non-Coding RNA Search

Lym2-sn28_A09.f

Sequence:


               
               AAATGGGCCCTGTTTTTTTTTTAGTCCGAGTTTCCTGAAACAATAAACTTGGCCGGGTTT
CCAAACATTTTTTTTAAAACAATTTTGTTCAAATTTTGAATCAAACATTGTTTTTTTATA
AAAAGGAAATAATTTCTCCCTAAAAAACCTGCAACCCCCTTCAAAAAAGGGGCCCTTAAA
ATTCAATAAACAGCCTCGGGGGTTTCCTACAAATAGCCCCCCCCCGTTTAAAAAATAAAA
TTTGAATCCTCCCATTTTTTAAATATTGGTTTAAAAAAAGCTGGGGCAAGCCCAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGGGCCCTGTTTTTTTTTTAGTCCGAGTTTCCTGAAACAATAAACTTGGCCGGGTTT
CCAAACATTTTTTTTAAAACAATTTTGTTCAAATTTTGAATCAAACATTGTTTTTTTATA
AAAAGGAAATAATTTCTCCCTAAAAAACCTGCAACCCCCTTCAAAAAAGGGGCCCTTAAA
ATTCAATAAACAGCCTCGGGGGTTTCCTACAAATAGCCCCCCCCCGTTTAAAAAATAAAA
TTTGAATCCTCCCATTTTTTAAATATTGGTTTAAAAAAAGCTGGGGCAAGCCCAATTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               184-299, - strand, RNAz p=0.716095

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-299, - strand, RNAz p=0.716095

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               2-299, gnl|bosTau2|chr23 (35920956-35920656)
               

               
               2-299, gnl|canFam2|chr35 (18460440-18460716)
               

               
               2-299, gnl|danRer3|chr19 (48875395-48875099)
               

               
               2-299, gnl|dasNov1|scaffold_15358 (33525-33801)
               

               
               2-299, gnl|echTel1|scaffold_311328 (128685-128408)
               

               
               2-299, gnl|galGal2|chr2 (61316855-61317126)
               

               
               2-299, gnl|hg17|chr6 (16407296-16407573)
               

               
               2-299, gnl|Hg17|chr6 (16407325-16407620)
               

               
               2-299, gnl|loxAfr1|scaffold_5042 (34606-34881)
               

               
               2-299, gnl|mm7|chr13 (45000205-45000482)
               

               
               2-299, gnl|Mm7|chr13 (45000234-45000531)
               

               
               2-299, gnl|monDom2|scaffold_3 (105165518-105165796)
               

               
               2-299, gnl|oryCun1|scaffold_157581 (358-83)
               

               
               2-299, gnl|panTro1|chr5 (16774365-16774642)
               

               
               2-299, gnl|rheMac2|chr4 (16316034-16316311)
               

               
               2-299, gnl|rn3|chr17 (25147352-25147078)
               

               
               2-299, gnl|xenTro1|scaffold_64 (218173-218447)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-299, gnl|bosTau2|chr23 (35920956-35920656)
               

               
               2-299, gnl|canFam2|chr35 (18460440-18460716)
               

               
               2-299, gnl|danRer3|chr19 (48875395-48875099)
               

               
               2-299, gnl|dasNov1|scaffold_15358 (33525-33801)
               

               
               2-299, gnl|echTel1|scaffold_311328 (128685-128408)
               

               
               2-299, gnl|galGal2|chr2 (61316855-61317126)
               

               
               2-299, gnl|hg17|chr6 (16407296-16407573)
               

               
               2-299, gnl|Hg17|chr6 (16407325-16407620)
               

               
               2-299, gnl|loxAfr1|scaffold_5042 (34606-34881)
               

               
               2-299, gnl|mm7|chr13 (45000205-45000482)
               

               
               2-299, gnl|Mm7|chr13 (45000234-45000531)
               

               
               2-299, gnl|monDom2|scaffold_3 (105165518-105165796)
               

               
               2-299, gnl|oryCun1|scaffold_157581 (358-83)
               

               
               2-299, gnl|panTro1|chr5 (16774365-16774642)
               

               
               2-299, gnl|rheMac2|chr4 (16316034-16316311)
               

               
               2-299, gnl|rn3|chr17 (25147352-25147078)
               

               
               2-299, gnl|xenTro1|scaffold_64 (218173-218447)

	2-299, gnl\|bosTau2\|chr23 (35920956-35920656)
	2-299, gnl\|canFam2\|chr35 (18460440-18460716)
	2-299, gnl\|danRer3\|chr19 (48875395-48875099)
	2-299, gnl\|dasNov1\|scaffold_15358 (33525-33801)
	2-299, gnl\|echTel1\|scaffold_311328 (128685-128408)
	2-299, gnl\|galGal2\|chr2 (61316855-61317126)
	2-299, gnl\|hg17\|chr6 (16407296-16407573)
	2-299, gnl\|Hg17\|chr6 (16407325-16407620)
	2-299, gnl\|loxAfr1\|scaffold_5042 (34606-34881)
	2-299, gnl\|mm7\|chr13 (45000205-45000482)
	2-299, gnl\|Mm7\|chr13 (45000234-45000531)
	2-299, gnl\|monDom2\|scaffold_3 (105165518-105165796)
	2-299, gnl\|oryCun1\|scaffold_157581 (358-83)
	2-299, gnl\|panTro1\|chr5 (16774365-16774642)
	2-299, gnl\|rheMac2\|chr4 (16316034-16316311)
	2-299, gnl\|rn3\|chr17 (25147352-25147078)
	2-299, gnl\|xenTro1\|scaffold_64 (218173-218447)