Non-Coding RNA Search

Lym2-sn28_C01.f

Sequence:


               
               CAAGGGCTAAGCATGAGACGTGCTCTTTATAAATTACATACGTACATATATACACAAAAA
TTGACAAGGCAGCCTTGCTGACAGGCTGTTATGAGAAAATGGATATAACCAGTGTTTGCT
GAAATGATCATTAATTGGCTTAAATGTTGGGAACTTAAGATACGTAAACACCCACATTGT
TTGAACATTTTTTGTACATCAAAGGAATTTCAAGTGCTTCTGTCTGGCTACACTTGCATT
TGTTAACAGTGGAGCAGCAATAGCACTGAACTGGGAGACGAGATGCATTACTCATTCATA
AAATGAGAGGGCTGGACAAGATCAGGCATTCTTATCTCAGAATACATGATTCGTGGATGG
CTTCAGGGTCTCTGGACACCGTGAAGCCGTCAACCAAATTTTGCACATAAGTATGTACAT
TTTTCTGGATATAGAGTCTAGCTATTATTAGATTCTCAAAAGGTCTAGAATCCCTAAATG
GTTTAAAAGTTAAACTGAATCATTGTGAAGGCTGCTTTCAGCTCTAAGGAAAACCAATGT
CCCTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGGCTAAGCATGAGACGTGCTCTTTATAAATTACATACGTACATATATACACAAAAA
TTGACAAGGCAGCCTTGCTGACAGGCTGTTATGAGAAAATGGATATAACCAGTGTTTGCT
GAAATGATCATTAATTGGCTTAAATGTTGGGAACTTAAGATACGTAAACACCCACATTGT
TTGAACATTTTTTGTACATCAAAGGAATTTCAAGTGCTTCTGTCTGGCTACACTTGCATT
TGTTAACAGTGGAGCAGCAATAGCACTGAACTGGGAGACGAGATGCATTACTCATTCATA
AAATGAGAGGGCTGGACAAGATCAGGCATTCTTATCTCAGAATACATGATTCGTGGATGG
CTTCAGGGTCTCTGGACACCGTGAAGCCGTCAACCAAATTTTGCACATAAGTATGTACAT
TTTTCTGGATATAGAGTCTAGCTATTATTAGATTCTCAAAAGGTCTAGAATCCCTAAATG
GTTTAAAAGTTAAACTGAATCATTGTGAAGGCTGCTTTCAGCTCTAAGGAAAACCAATGT
CCCTGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               281-440, + strand, RNAz p=0.999501

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-440, + strand, RNAz p=0.999501

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               371-429, + strand, RNAmicro p=0.98507
               

               
               371-495, - strand, RNAmicro p=0.970041

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               371-429, + strand, RNAmicro p=0.98507
               

               
               371-495, - strand, RNAmicro p=0.970041

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-528, gnl|bosTau2|chr3 (27648641-27649159)
               

               
               28-528, gnl|Hg17|chr1 (112715581-112715080)
               

               
               28-528, gnl|Mm7|chr3 (104797815-104798951)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-528, gnl|bosTau2|chr3 (27648641-27649159)
               

               
               28-528, gnl|Hg17|chr1 (112715581-112715080)
               

               
               28-528, gnl|Mm7|chr3 (104797815-104798951)

	371-429, + strand, RNAmicro p=0.98507
	371-495, - strand, RNAmicro p=0.970041

	28-528, gnl\|bosTau2\|chr3 (27648641-27649159)
	28-528, gnl\|Hg17\|chr1 (112715581-112715080)
	28-528, gnl\|Mm7\|chr3 (104797815-104798951)