Non-Coding RNA Search

Lym2-sn34_G03.f1

Sequence:


               
               TCGCGATCTAGAGGTCTGATCTCTTCTATATTCCTGAGTTTCCACAATTGTATCCTAAAA
TGAGGGTAAAGTTTTCATTCCATTTTAATCTATTTAGACTAATTTCATAGATAGAAAATT
ACATTGTACCCTTTCAGTTAACATGATACTTGTCTTAGAGTTTGTCTTACTAAAAACTCA
TTCTTCACCTTTTTTTCCCCTCAAGCAGATCCGTATGTATACATATATACATACACAGGC
AAGATTTTTGTTGTCTTTTAAAAATATGTTCATACAAACATACTCCTTAAAGCTTGTTCT
CTTCACTTAACAGTTCGCATGGAATTCCCTCTCAGTAGGTAAAAGATAAAGAATGCTTTT
CTGTTTACTAGTGCATACCCTCCTGTTCACAAAGCTTCCAATTAAACTCATTTCTCAGAT
ATTGCCTAGAAACAAGAACAAAACTATACCCTGTGCCCCCATCCTTAAGGCATTGTATTT
GCCGGTTTAGCAACCCCAACAAAGTGAAACCCTTATTTCTCCACATACTCTGTGTTTGCC
TTGTCAGGCAACAGACCTTTCCTTTCCTCCTCCCCCACGACCACTGGCGGTGGACTTTGC
TGAGAGAGTTTAGAGTTTTTAGTACCAATACATCCTTAGAGTATCATCCACGGTGTATTC
TT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGATCTAGAGGTCTGATCTCTTCTATATTCCTGAGTTTCCACAATTGTATCCTAAAA
TGAGGGTAAAGTTTTCATTCCATTTTAATCTATTTAGACTAATTTCATAGATAGAAAATT
ACATTGTACCCTTTCAGTTAACATGATACTTGTCTTAGAGTTTGTCTTACTAAAAACTCA
TTCTTCACCTTTTTTTCCCCTCAAGCAGATCCGTATGTATACATATATACATACACAGGC
AAGATTTTTGTTGTCTTTTAAAAATATGTTCATACAAACATACTCCTTAAAGCTTGTTCT
CTTCACTTAACAGTTCGCATGGAATTCCCTCTCAGTAGGTAAAAGATAAAGAATGCTTTT
CTGTTTACTAGTGCATACCCTCCTGTTCACAAAGCTTCCAATTAAACTCATTTCTCAGAT
ATTGCCTAGAAACAAGAACAAAACTATACCCTGTGCCCCCATCCTTAAGGCATTGTATTT
GCCGGTTTAGCAACCCCAACAAAGTGAAACCCTTATTTCTCCACATACTCTGTGTTTGCC
TTGTCAGGCAACAGACCTTTCCTTTCCTCCTCCCCCACGACCACTGGCGGTGGACTTTGC
TGAGAGAGTTTAGAGTTTTTAGTACCAATACATCCTTAGAGTATCATCCACGGTGTATTC
TT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               194-300, + strand, RNAz p=0.960406

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-300, + strand, RNAz p=0.960406

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               45-300, gnl|bosTau2|chr4 (8021380-8021129)
               

               
               45-300, gnl|Hg17|chr7 (16436208-16435942)
               


               
               342-662, gnl|bosTau2|chr4 (8021014-8020687)
               

               
               342-662, gnl|canFam2|chr14 (34082889-34083356)
               

               
               342-662, gnl|hg17|chr7 (16433068-16433458)
               

               
               342-662, gnl|panTro1|chr6 (17317493-17317883)
               

               
               342-662, gnl|rheMac2|chr3 (109493095-109492706)
               

               
               342-662, gnl|rn3|chr6 (54907524-54907247)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-300, gnl|bosTau2|chr4 (8021380-8021129)
               

               
               45-300, gnl|Hg17|chr7 (16436208-16435942)
               


               
               342-662, gnl|bosTau2|chr4 (8021014-8020687)
               

               
               342-662, gnl|canFam2|chr14 (34082889-34083356)
               

               
               342-662, gnl|hg17|chr7 (16433068-16433458)
               

               
               342-662, gnl|panTro1|chr6 (17317493-17317883)
               

               
               342-662, gnl|rheMac2|chr3 (109493095-109492706)
               

               
               342-662, gnl|rn3|chr6 (54907524-54907247)

	45-300, gnl\|bosTau2\|chr4 (8021380-8021129)
	45-300, gnl\|Hg17\|chr7 (16436208-16435942)

	342-662, gnl\|bosTau2\|chr4 (8021014-8020687)
	342-662, gnl\|canFam2\|chr14 (34082889-34083356)
	342-662, gnl\|hg17\|chr7 (16433068-16433458)
	342-662, gnl\|panTro1\|chr6 (17317493-17317883)
	342-662, gnl\|rheMac2\|chr3 (109493095-109492706)
	342-662, gnl\|rn3\|chr6 (54907524-54907247)