Non-Coding RNA Search

Lym2-sn35_E03.f1

Sequence:


               
               CGCGATCTAGAACTAGTCCTAGTAGTAAGGACTTGGCACTTTCACTGCTGTGGCTTGGGT
TGCTGCGGTGGTGTGCGTTCGATGCCTGGCCTGGGAACAGGTCGTGAGCACAGCCTCACC
GCAAATTCTTAGAATGTACGAtcttccaagactaaaccaagatgaaatagaaaagatgaa
tggaccaatcacaagaactgaaattgaaactgattaaaaaatttccaacaaagaaaagtc
caggaccagatggcttcataggcgaattctaccaaacatacaaagaggatatggtgccca
tcgtccttaaattttttcaaacagttgaagtagaaggaacactcccaaagacattctatg
atgccactgtcaccctaattccaaaaccagacaaagataccaccaaaaaagaaaactatg
ggccaatatctttgatgaatttagacacaaaaattctcaacaaaattttagccaaccgaa
tccaataacctatcaaaaagatcgtacactatgaccaggtgggattcatcccaggttcaT
AGAGGTTTTCGAGATTCCTTGACATGTTTTGGCAAGTTTAGTTTCCAAGTACCATTATAA
CCTATGCTATGAGTGTACAGATTGTACTGAGTGTGGGTCCTGGTGTGGCTCTCGTAAAAC
CAGATTCTGATCAGTTCTTGAGACAGCATTGAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGATCTAGAACTAGTCCTAGTAGTAAGGACTTGGCACTTTCACTGCTGTGGCTTGGGT
TGCTGCGGTGGTGTGCGTTCGATGCCTGGCCTGGGAACAGGTCGTGAGCACAGCCTCACC
GCAAATTCTTAGAATGTACGAtcttccaagactaaaccaagatgaaatagaaaagatgaa
tggaccaatcacaagaactgaaattgaaactgattaaaaaatttccaacaaagaaaagtc
caggaccagatggcttcataggcgaattctaccaaacatacaaagaggatatggtgccca
tcgtccttaaattttttcaaacagttgaagtagaaggaacactcccaaagacattctatg
atgccactgtcaccctaattccaaaaccagacaaagataccaccaaaaaagaaaactatg
ggccaatatctttgatgaatttagacacaaaaattctcaacaaaattttagccaaccgaa
tccaataacctatcaaaaagatcgtacactatgaccaggtgggattcatcccaggttcaT
AGAGGTTTTCGAGATTCCTTGACATGTTTTGGCAAGTTTAGTTTCCAAGTACCATTATAA
CCTATGCTATGAGTGTACAGATTGTACTGAGTGTGGGTCCTGGTGTGGCTCTCGTAAAAC
CAGATTCTGATCAGTTCTTGAGACAGCATTGAAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57108175|ref|XP_535465.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57108175|ref|XP_535465.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               278-397, - strand, RNAz p=0.751165

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-397, - strand, RNAz p=0.751165

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               122-535, gnl|bosTau2|chr11 (11590265-11590671)
               


               
               547-696, gnl|bosTau2|chr20 (23872001-23872151)
               

               
               547-696, gnl|Hg17|chr5 (38186829-38186979)
               

               
               547-696, gnl|Mm7|chr15 (7321185-7321064)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-535, gnl|bosTau2|chr11 (11590265-11590671)
               


               
               547-696, gnl|bosTau2|chr20 (23872001-23872151)
               

               
               547-696, gnl|Hg17|chr5 (38186829-38186979)
               

               
               547-696, gnl|Mm7|chr15 (7321185-7321064)

	122-535, gnl\|bosTau2\|chr11 (11590265-11590671)

	547-696, gnl\|bosTau2\|chr20 (23872001-23872151)
	547-696, gnl\|Hg17\|chr5 (38186829-38186979)
	547-696, gnl\|Mm7\|chr15 (7321185-7321064)