Non-Coding RNA Search

Lym2-sn39_D05.f

Sequence:


               
               AAGCACAAACCAGCCCAGGGCACCTTTATTACACTCTGGTGGGGAGGAGCCCAGGGCATG
AACTCATGGGTTTAAGAATTGGCTCTTTATCAAATAATGTTAAGGGAAAAAAATACACCT
ATGTCAGCCTCATTCCTTTGGTCATTACAGAGCAACAGAAAAAAATTTAAAAGTTATTCA
TAAGCTGTCGGACGCGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCACAAACCAGCCCAGGGCACCTTTATTACACTCTGGTGGGGAGGAGCCCAGGGCATG
AACTCATGGGTTTAAGAATTGGCTCTTTATCAAATAATGTTAAGGGAAAAAAATACACCT
ATGTCAGCCTCATTCCTTTGGTCATTACAGAGCAACAGAAAAAAATTTAAAAGTTATTCA
TAAGCTGTCGGACGCGTGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-117, + strand, RNAz p=0.998701
               

               
               43-161, - strand, RNAz p=0.798382

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.998701
               

               
               43-161, - strand, RNAz p=0.798382

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-195, gnl|bosTau2|chr7 (26147963-26147774)
               

               
               1-195, gnl|canFam2|chr4 (40013464-40013060)
               

               
               1-195, gnl|dasNov1|scaffold_22898 (3077-2659)
               

               
               1-195, gnl|echTel1|scaffold_304835 (30562-30147)
               

               
               1-195, gnl|galGal2|chr13 (9377324-9376898)
               

               
               1-195, gnl|hg17|chr5 (175866824-175867245)
               

               
               1-195, gnl|Hg17|chr5 (175867243-175867053)
               

               
               1-195, gnl|loxAfr1|scaffold_30165 (9019-9450)
               

               
               1-195, gnl|mm7|chr13 (53745636-53745975)
               

               
               1-195, gnl|Mm7|chr13 (53745973-53745799)
               

               
               1-195, gnl|monDom2|scaffold_6 (18691334-18690911)
               

               
               1-195, gnl|oryCun1|scaffold_142183 (15751-15334)
               

               
               1-195, gnl|panTro1|chr4 (183320659-183321078)
               

               
               1-195, gnl|rheMac2|chr6 (172986499-172986907)
               

               
               1-195, gnl|rn3|chr17 (16011843-16011480)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-195, gnl|bosTau2|chr7 (26147963-26147774)
               

               
               1-195, gnl|canFam2|chr4 (40013464-40013060)
               

               
               1-195, gnl|dasNov1|scaffold_22898 (3077-2659)
               

               
               1-195, gnl|echTel1|scaffold_304835 (30562-30147)
               

               
               1-195, gnl|galGal2|chr13 (9377324-9376898)
               

               
               1-195, gnl|hg17|chr5 (175866824-175867245)
               

               
               1-195, gnl|Hg17|chr5 (175867243-175867053)
               

               
               1-195, gnl|loxAfr1|scaffold_30165 (9019-9450)
               

               
               1-195, gnl|mm7|chr13 (53745636-53745975)
               

               
               1-195, gnl|Mm7|chr13 (53745973-53745799)
               

               
               1-195, gnl|monDom2|scaffold_6 (18691334-18690911)
               

               
               1-195, gnl|oryCun1|scaffold_142183 (15751-15334)
               

               
               1-195, gnl|panTro1|chr4 (183320659-183321078)
               

               
               1-195, gnl|rheMac2|chr6 (172986499-172986907)
               

               
               1-195, gnl|rn3|chr17 (16011843-16011480)

	1-117, + strand, RNAz p=0.998701
	43-161, - strand, RNAz p=0.798382

	1-195, gnl\|bosTau2\|chr7 (26147963-26147774)
	1-195, gnl\|canFam2\|chr4 (40013464-40013060)
	1-195, gnl\|dasNov1\|scaffold_22898 (3077-2659)
	1-195, gnl\|echTel1\|scaffold_304835 (30562-30147)
	1-195, gnl\|galGal2\|chr13 (9377324-9376898)
	1-195, gnl\|hg17\|chr5 (175866824-175867245)
	1-195, gnl\|Hg17\|chr5 (175867243-175867053)
	1-195, gnl\|loxAfr1\|scaffold_30165 (9019-9450)
	1-195, gnl\|mm7\|chr13 (53745636-53745975)
	1-195, gnl\|Mm7\|chr13 (53745973-53745799)
	1-195, gnl\|monDom2\|scaffold_6 (18691334-18690911)
	1-195, gnl\|oryCun1\|scaffold_142183 (15751-15334)
	1-195, gnl\|panTro1\|chr4 (183320659-183321078)
	1-195, gnl\|rheMac2\|chr6 (172986499-172986907)
	1-195, gnl\|rn3\|chr17 (16011843-16011480)