Non-Coding RNA Search

Lym2-sn39_D09.f

Sequence:


               
               TCGCGATCTAGAACCGGACGCGTGGGCGGACGCGTGGGTGGGAATATTTTGCAGTCATGC
GAGGATAATCAATAATCAAAAAAAAAAAGTTTAGTTTTTGCCTTTGTGTGCACATTTTAT
TTTTTAGGTGGATTGTTATCCAACTAAAATTAAGAAAATGCCAGCCCTCACAGCCTCTTC
CCCACAGATTTTACTGCTTTCCAAGGGGAGGAAAAAAAAAACAAAAACAAAAAAACTCTT
AGGAATATCACAGTTTTTAAACCTTACTTCTTACTTACTACTTATATATTTACCTATTAT
TTATTCATTGTGTTATCACAGCAAAAAGACTTCACTTAGCTTTTATTTTTAAAAAAGAAT
ACTTGGTTGGGGTTGCTATTAGTTTATCCGATGCTTTAATGACCATTTAACTGTTCCCAA
AAAGCTAACCAAGTAACTAAGGAGAAATGCTTCTTTCACAAATCTAAAACAAACAAACAA
ACAAACAAAAAAACTGTTTCCAAGATACAATCTAAGAAATATAAAATGAATATCAAAAGT
TGTTCTCTAATATATGTTTCGTATTTCTTTTTAAAGCCAACTAATACACACAGTCATTGA
AATTACATGATTTAACTTGTTTCTCTGAAACATACATCTGTGAGCAAAGATACAACACGT
TACGATACAGTAAAAGGTGGTCTCGGGAACCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGATCTAGAACCGGACGCGTGGGCGGACGCGTGGGTGGGAATATTTTGCAGTCATGC
GAGGATAATCAATAATCAAAAAAAAAAAGTTTAGTTTTTGCCTTTGTGTGCACATTTTAT
TTTTTAGGTGGATTGTTATCCAACTAAAATTAAGAAAATGCCAGCCCTCACAGCCTCTTC
CCCACAGATTTTACTGCTTTCCAAGGGGAGGAAAAAAAAAACAAAAACAAAAAAACTCTT
AGGAATATCACAGTTTTTAAACCTTACTTCTTACTTACTACTTATATATTTACCTATTAT
TTATTCATTGTGTTATCACAGCAAAAAGACTTCACTTAGCTTTTATTTTTAAAAAAGAAT
ACTTGGTTGGGGTTGCTATTAGTTTATCCGATGCTTTAATGACCATTTAACTGTTCCCAA
AAAGCTAACCAAGTAACTAAGGAGAAATGCTTCTTTCACAAATCTAAAACAAACAAACAA
ACAAACAAAAAAACTGTTTCCAAGATACAATCTAAGAAATATAAAATGAATATCAAAAGT
TGTTCTCTAATATATGTTTCGTATTTCTTTTTAAAGCCAACTAATACACACAGTCATTGA
AATTACATGATTTAACTTGTTTCTCTGAAACATACATCTGTGAGCAAAGATACAACACGT
TACGATACAGTAAAAGGTGGTCTCGGGAACCATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               105-217, - strand, RNAz p=0.813204

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-217, - strand, RNAz p=0.813204

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               105-694, gnl|bosTau2|chr21 (44209541-44210108)
               

               
               105-694, gnl|Hg17|chr3 (151094269-151093695)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-694, gnl|bosTau2|chr21 (44209541-44210108)
               

               
               105-694, gnl|Hg17|chr3 (151094269-151093695)

	105-694, gnl\|bosTau2\|chr21 (44209541-44210108)
	105-694, gnl\|Hg17\|chr3 (151094269-151093695)