Non-Coding RNA Search

Lym2-sn46_D09.f

Sequence:


               
               GTCTGAGCTTGGAAcatgcagaagtttccaggccagtgatccaacctgcaccacagaagt
gacaatcacagatccttaacctgttgagccaccagggaactccataacccactgagcaag
gccagggatcaaacccgcaacctcatggttcctagtcagattcgttaaccactgcaccac
gacgggaactcTGAAGAAACCTAACTTTAGATGACAGAACCATGTTCATACTTTGGTATA
AAGAGGTTCTCAACCTGATCCAATTAATAGTTTGGCTGGGCTTCTGATCCCATTTTTCAA
TCCAAAGATGGGAAGGGTGGTGCATCTTATTTCCGCTTATGACTCTTCAGAAAGTATCTT
ACATTCATCAAAACTTCACATAGTCCTTAGTCTTTGGGGGGACCTTAACAAATGTTGGAA
GATATCCAAAGATTTCTATAAGATCCCAATTACCAAGAGAATATAGAATAAACTTCTTAA
CCACTTAAAGCCTCCATAGTAAGGGTCAAATACAGTTCATCGCCCAACAATCCATCAATA
TACATCTTCACTCTATTCTAGTTAAACACTTCTCACTGAATACAAAATGTGCTTCATGTT
GTATGTTGGCTTGCCTCTTGCCTTTGTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGAGCTTGGAAcatgcagaagtttccaggccagtgatccaacctgcaccacagaagt
gacaatcacagatccttaacctgttgagccaccagggaactccataacccactgagcaag
gccagggatcaaacccgcaacctcatggttcctagtcagattcgttaaccactgcaccac
gacgggaactcTGAAGAAACCTAACTTTAGATGACAGAACCATGTTCATACTTTGGTATA
AAGAGGTTCTCAACCTGATCCAATTAATAGTTTGGCTGGGCTTCTGATCCCATTTTTCAA
TCCAAAGATGGGAAGGGTGGTGCATCTTATTTCCGCTTATGACTCTTCAGAAAGTATCTT
ACATTCATCAAAACTTCACATAGTCCTTAGTCTTTGGGGGGACCTTAACAAATGTTGGAA
GATATCCAAAGATTTCTATAAGATCCCAATTACCAAGAGAATATAGAATAAACTTCTTAA
CCACTTAAAGCCTCCATAGTAAGGGTCAAATACAGTTCATCGCCCAACAATCCATCAATA
TACATCTTCACTCTATTCTAGTTAAACACTTCTCACTGAATACAAAATGTGCTTCATGTT
GTATGTTGGCTTGCCTCTTGCCTTTGTCATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               364-483, - strand, RNAz p=0.979459

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               364-483, - strand, RNAz p=0.979459

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               337-483, - strand, RNAmicro p=0.999233

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               337-483, - strand, RNAmicro p=0.999233

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               167-631, gnl|bosTau2|chr24 (39882823-39882353)
               

               
               167-631, gnl|Hg17|chr18 (47299457-47299049)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-631, gnl|bosTau2|chr24 (39882823-39882353)
               

               
               167-631, gnl|Hg17|chr18 (47299457-47299049)

	167-631, gnl\|bosTau2\|chr24 (39882823-39882353)
	167-631, gnl\|Hg17\|chr18 (47299457-47299049)