Non-Coding RNA Search

Lym2-sn46_H10.f

Sequence:


               
               CTTTTTCTCTTTTTTTCCAAAGAAATTGGATTCGGAAATCCCGAAATCTGCCCAGCTTCG
CCGTAGTAGCTCCTGTTCTAAAGACCTTGGGCGGAAACCTAATAGAGTTGGGTTCCCTTT
CTTGCCAACGTATGCGGAAGGGGCTTTCGGTTTAGTTTTCTCCACCTCGGGTGCGGCGCC
CTGGATGGCGACCCTCAGCCCCAGGGACTCCATCTTTTTGACCTCGAGGCCTTGCCAAAC
CGCTCCCTTTAAAATAGGGGGTGGAGGGGCCAGGACAGAGAAAAAAAGACGCACCAGGCA
AACACACACTGGGATTGGGTAACTTGTTTGAAATAAGCCTGGGATTGGACCCGAAACCAA
TCTAGACCGGCTGTGCAACTAAATTGTCTGACTTTCCCCATTTATAAAATTGTAGGGGTT
GGGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTCTCTTTTTTTCCAAAGAAATTGGATTCGGAAATCCCGAAATCTGCCCAGCTTCG
CCGTAGTAGCTCCTGTTCTAAAGACCTTGGGCGGAAACCTAATAGAGTTGGGTTCCCTTT
CTTGCCAACGTATGCGGAAGGGGCTTTCGGTTTAGTTTTCTCCACCTCGGGTGCGGCGCC
CTGGATGGCGACCCTCAGCCCCAGGGACTCCATCTTTTTGACCTCGAGGCCTTGCCAAAC
CGCTCCCTTTAAAATAGGGGGTGGAGGGGCCAGGACAGAGAAAAAAAGACGCACCAGGCA
AACACACACTGGGATTGGGTAACTTGTTTGAAATAAGCCTGGGATTGGACCCGAAACCAA
TCTAGACCGGCTGTGCAACTAAATTGTCTGACTTTCCCCATTTATAAAATTGTAGGGGTT
GGGTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-160, + strand, RNAz p=0.91993

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, + strand, RNAz p=0.91993

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               89-164, + strand, RNAmicro p=0.976802

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               89-164, + strand, RNAmicro p=0.976802

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-418, gnl|bosTau2|chr1 (50732850-50733270)
               

               
               2-418, gnl|Hg17|chr3 (188938996-188938586)
               

               
               2-418, gnl|Mm7|chr16 (23640673-23640195)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-418, gnl|bosTau2|chr1 (50732850-50733270)
               

               
               2-418, gnl|Hg17|chr3 (188938996-188938586)
               

               
               2-418, gnl|Mm7|chr16 (23640673-23640195)

	2-418, gnl\|bosTau2\|chr1 (50732850-50733270)
	2-418, gnl\|Hg17\|chr3 (188938996-188938586)
	2-418, gnl\|Mm7\|chr16 (23640673-23640195)