Non-Coding RNA Search

Lym2-sn50_B03.f

Sequence:


               
               CATTTGGCCTCAGCATGCAGCTTAATGCAGCTTGATCTGGGCTCTCAGTTCCTAGGCCAG
AGATTGAACCTCTTTTTGGTGCAAACACCAAATCCTAACCACTAGGCTACCAGGAACTCC
CCTATAATCTCTATCTCTAACCTCGTCACACAATTATCACTCTTTCTAAAGTCAGTTCCT
TTGAACATATGTGCCGCAtcttaatcaattcatctgttgatggacatttaggtgttttct
atgtcttggctattgtgaatagtgctgcaatgaacatagaggtgagtgtatctttttgaa
ttattgatttgtccagatatatgcccagaagtgagattactggatcatatggtagttcta
catttagttttccgaggaactctcatagtgttttccataggggttgtaccaatttacat

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTGGCCTCAGCATGCAGCTTAATGCAGCTTGATCTGGGCTCTCAGTTCCTAGGCCAG
AGATTGAACCTCTTTTTGGTGCAAACACCAAATCCTAACCACTAGGCTACCAGGAACTCC
CCTATAATCTCTATCTCTAACCTCGTCACACAATTATCACTCTTTCTAAAGTCAGTTCCT
TTGAACATATGTGCCGCAtcttaatcaattcatctgttgatggacatttaggtgttttct
atgtcttggctattgtgaatagtgctgcaatgaacatagaggtgagtgtatctttttgaa
ttattgatttgtccagatatatgcccagaagtgagattactggatcatatggtagttcta
catttagttttccgaggaactctcatagtgttttccataggggttgtaccaatttacat

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34526674|dbj|BAC85261.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34526674|dbj|BAC85261.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               216-335, - strand, RNAz p=0.95989

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-335, - strand, RNAz p=0.95989

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               175-419, gnl|bosTau2|chr1 (51983350-51983114)
               


               
               176-403, gnl|bosTau2|chr10 (2856816-2856594)
               


               
               177-370, gnl|bosTau2|chr10 (55622403-55622596)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-419, gnl|bosTau2|chr1 (51983350-51983114)
               


               
               176-403, gnl|bosTau2|chr10 (2856816-2856594)
               


               
               177-370, gnl|bosTau2|chr10 (55622403-55622596)

	175-419, gnl\|bosTau2\|chr1 (51983350-51983114)

	176-403, gnl\|bosTau2\|chr10 (2856816-2856594)

	177-370, gnl\|bosTau2\|chr10 (55622403-55622596)