Non-Coding RNA Search

Lym2-sn54_D03.f

Sequence:


               
               CTCTTTGGTTCTTGGGGAAGATTTCCTTTGGATTCTTGGGTTACACTAGCAGCATGGAAG
ACTCCCCCCCACCCCAAAAGAAAACATAAAACATGTGCAACCCTAAAAAAAAACATAAAA
TAAGATAGAAAATAAAAATAAAACAAACAAAAAAACCTGTGCCTCCTATCTGGGAGGATG
TGATGAGAAATTTTATAGCAAGAGTTCAAGGGTGTGATTGCTGATGAGGATCAGCgtgtg
tgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtAGGGCCTGTCAGGAG
GTTTCCTAAAGAGCTTCTGTGGTTCTCAAGGTTATCTTGCGACCTTAggagttctcttgt
gtttcagcaggttaaggatctggcgttgtcactgcagctcgtgggttgctgctgtggcac
aggttcgatccctggccccaagaacttccacatgccaagggcTGGGGAAAAAAAAAAAAA
AATCAAACTGTGACCTTCTCCCTGGAATGAAGAATGCTTCATCAAACAGTTAACATCTTC
CCTTTGCTGGGGGTTTTGGTTCTGCAAAAGAGCTCAAAGATACTATTATGCGTATCCCTT
GAGAGGGAATCAGGACCCTGCCCACAGGCCACACTATTGTCCTTTGACTGCTCCTCCCTA
GTCTCTGCATCCACTCACTTCCTGATGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTTGGTTCTTGGGGAAGATTTCCTTTGGATTCTTGGGTTACACTAGCAGCATGGAAG
ACTCCCCCCCACCCCAAAAGAAAACATAAAACATGTGCAACCCTAAAAAAAAACATAAAA
TAAGATAGAAAATAAAAATAAAACAAACAAAAAAACCTGTGCCTCCTATCTGGGAGGATG
TGATGAGAAATTTTATAGCAAGAGTTCAAGGGTGTGATTGCTGATGAGGATCAGCgtgtg
tgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtAGGGCCTGTCAGGAG
GTTTCCTAAAGAGCTTCTGTGGTTCTCAAGGTTATCTTGCGACCTTAggagttctcttgt
gtttcagcaggttaaggatctggcgttgtcactgcagctcgtgggttgctgctgtggcac
aggttcgatccctggccccaagaacttccacatgccaagggcTGGGGAAAAAAAAAAAAA
AATCAAACTGTGACCTTCTCCCTGGAATGAAGAATGCTTCATCAAACAGTTAACATCTTC
CCTTTGCTGGGGGTTTTGGTTCTGCAAAAGAGCTCAAAGATACTATTATGCGTATCCCTT
GAGAGGGAATCAGGACCCTGCCCACAGGCCACACTATTGTCCTTTGACTGCTCCTCCCTA
GTCTCTGCATCCACTCACTTCCTGATGCTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               591-682, - strand, RNAz p=0.939136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               591-682, - strand, RNAz p=0.939136

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               482-682, gnl|bosTau2|chr16 (33147885-33147688)
               

               
               482-682, gnl|hg17|chr1 (5781134-5781280)
               

               
               482-682, gnl|loxAfr1|scaffold_158103 (1690-1855)
               

               
               482-682, gnl|panTro1|chr1 (5660507-5660652)
               

               
               482-682, gnl|rheMac2|chr1 (8785307-8785453)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               482-682, gnl|bosTau2|chr16 (33147885-33147688)
               

               
               482-682, gnl|hg17|chr1 (5781134-5781280)
               

               
               482-682, gnl|loxAfr1|scaffold_158103 (1690-1855)
               

               
               482-682, gnl|panTro1|chr1 (5660507-5660652)
               

               
               482-682, gnl|rheMac2|chr1 (8785307-8785453)

	482-682, gnl\|bosTau2\|chr16 (33147885-33147688)
	482-682, gnl\|hg17\|chr1 (5781134-5781280)
	482-682, gnl\|loxAfr1\|scaffold_158103 (1690-1855)
	482-682, gnl\|panTro1\|chr1 (5660507-5660652)
	482-682, gnl\|rheMac2\|chr1 (8785307-8785453)