Non-Coding RNA Search

Lym2-sn54_H11.f

Sequence:


               
               TCGCGATCTAGAACTAGTCGCCCCACAAAACCCCTCAAGCTCTCAGAGAGTTACGAGAGG
CCATCCGCAGCCAAGTGGCCAGGCGCCCTGGTTGGCAGCCTGCATCTGCCTCTCCCTTGT
CCCTTGACCTTGAGGGACCTTCAGCCTCTGTGGGCTTTGGCCCTTTCACAGCTCCAGAGG
GATCATAACAGGACTTGCCTCATCCGGTCAGGGCAAGTGGCAGGTCACAAGAGGTGGTGA
GCACATGATGAGTGACAATGACAGTTCATGTCTGAGATTACAGTTCCAGCCACCTCAGAG
CATGGCCAGCAGGACTCAGCTGTGTGGAGTTTGGGCTTGGAATTCTCGATTCCAATGGTA
TCCACTCTTATTCTTGGCCTTACCAGGGAAACTGGCCAATACGGACTCAGAAATCCGGGC
CCCTGGGGTGACAGAGAGGCCTAGAAGGTGGGTAGCTGGTGGTGTGTGCCTGGGCACAAG
CCTGTTATGATGCAACCACAATTCGCCAAATTGCTGATACTTGTACTAATTACAGTTTAT
AAAACACCTTCCCAATAATTTTCTCACTTGTTTTCACAACCACCACGGGAAGCAGATTTC
ATCTCTCTCTTAAGAGATGAGAAAGCTGAGATTCACAGAGGTTAGGGGACTTGCCGAATG
TCACCTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGATCTAGAACTAGTCGCCCCACAAAACCCCTCAAGCTCTCAGAGAGTTACGAGAGG
CCATCCGCAGCCAAGTGGCCAGGCGCCCTGGTTGGCAGCCTGCATCTGCCTCTCCCTTGT
CCCTTGACCTTGAGGGACCTTCAGCCTCTGTGGGCTTTGGCCCTTTCACAGCTCCAGAGG
GATCATAACAGGACTTGCCTCATCCGGTCAGGGCAAGTGGCAGGTCACAAGAGGTGGTGA
GCACATGATGAGTGACAATGACAGTTCATGTCTGAGATTACAGTTCCAGCCACCTCAGAG
CATGGCCAGCAGGACTCAGCTGTGTGGAGTTTGGGCTTGGAATTCTCGATTCCAATGGTA
TCCACTCTTATTCTTGGCCTTACCAGGGAAACTGGCCAATACGGACTCAGAAATCCGGGC
CCCTGGGGTGACAGAGAGGCCTAGAAGGTGGGTAGCTGGTGGTGTGTGCCTGGGCACAAG
CCTGTTATGATGCAACCACAATTCGCCAAATTGCTGATACTTGTACTAATTACAGTTTAT
AAAACACCTTCCCAATAATTTTCTCACTTGTTTTCACAACCACCACGGGAAGCAGATTTC
ATCTCTCTCTTAAGAGATGAGAAAGCTGAGATTCACAGAGGTTAGGGGACTTGCCGAATG
TCACCTCGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               345-458, - strand, RNAz p=0.929765
               

               
               537-664, + strand, RNAz p=0.62221

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               345-458, - strand, RNAz p=0.929765
               

               
               537-664, + strand, RNAz p=0.62221

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               365-506, - strand, RNAmicro p=0.997857

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               365-506, - strand, RNAmicro p=0.997857

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               189-664, gnl|bosTau2|chr11 (4659841-4659377)
               

               
               189-664, gnl|Hg17|chr2 (100274028-100274451)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-664, gnl|bosTau2|chr11 (4659841-4659377)
               

               
               189-664, gnl|Hg17|chr2 (100274028-100274451)

	345-458, - strand, RNAz p=0.929765
	537-664, + strand, RNAz p=0.62221

	189-664, gnl\|bosTau2\|chr11 (4659841-4659377)
	189-664, gnl\|Hg17\|chr2 (100274028-100274451)