Non-Coding RNA Search

Lym2-sn56_H01.f1

Sequence:


               
               TCGCGATCTAGACTAGTCAACAGGGTGGGCTGGCCAGAGCCGGGAGGGTGGGAAACTATG
TCAAATCCACAAGGAAAAAAAAAAACAAAAAACAAATGGGCTTGGGCACACATATTCACA
GTGACCATTGTGGGACGGAAATTCTGTAACTAGAGTTCGCTATGTGAGCAAGATTGCTTT
GTATTTCAGGCTCCACCATAGGCAGGGCCCAAAGACGTTCCCAGAAAAAGTTAGTGAGTT
CAGTGTGTTGCTCTGTGAACATTTTTGGGTGTTTTCAGTCTACTGAAGCACCTGGGGCTG
GCCTGTGGTGGAAACGACACAGAGTATAAACAGAGCATTGTTTGTGAGTACTACCAAGGA
TGTTTCTAGAATATGCTTCTGTAGGTGGATAAAGCTGGTTATTGTTGAGCTTTTCTTGAC
CAAAAAATAATACCACTGATTTAGTAGGCCATTTTGGAAAAATGCCTAGTAAAATCTGTT
GCAGGGCTGGGGTTTACTTTGAAAATTTTCTCTGTTTTTAAAATTACACCAATGGAGTAT
TTTCTTGACTTAAGTGACATTTGTGAAACAATTGAGGAGCAAATAAAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGATCTAGACTAGTCAACAGGGTGGGCTGGCCAGAGCCGGGAGGGTGGGAAACTATG
TCAAATCCACAAGGAAAAAAAAAAACAAAAAACAAATGGGCTTGGGCACACATATTCACA
GTGACCATTGTGGGACGGAAATTCTGTAACTAGAGTTCGCTATGTGAGCAAGATTGCTTT
GTATTTCAGGCTCCACCATAGGCAGGGCCCAAAGACGTTCCCAGAAAAAGTTAGTGAGTT
CAGTGTGTTGCTCTGTGAACATTTTTGGGTGTTTTCAGTCTACTGAAGCACCTGGGGCTG
GCCTGTGGTGGAAACGACACAGAGTATAAACAGAGCATTGTTTGTGAGTACTACCAAGGA
TGTTTCTAGAATATGCTTCTGTAGGTGGATAAAGCTGGTTATTGTTGAGCTTTTCTTGAC
CAAAAAATAATACCACTGATTTAGTAGGCCATTTTGGAAAAATGCCTAGTAAAATCTGTT
GCAGGGCTGGGGTTTACTTTGAAAATTTTCTCTGTTTTTAAAATTACACCAATGGAGTAT
TTTCTTGACTTAAGTGACATTTGTGAAACAATTGAGGAGCAAATAAAAACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               259-487, + strand, RNAz p=0.972841

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-487, + strand, RNAz p=0.972841

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               111-567, gnl|bosTau2|chr23 (24917963-24918416)
               

               
               111-567, gnl|canFam2|chr1 (43993703-43994127)
               

               
               111-567, gnl|dasNov1|scaffold_112739 (5227-5635)
               

               
               111-567, gnl|echTel1|scaffold_177469 (253-653)
               

               
               111-567, gnl|hg17|chr6 (150863017-150863444)
               

               
               111-567, gnl|Hg17|chr6 (150863520-150863053)
               

               
               111-567, gnl|loxAfr1|scaffold_4061 (11051-11473)
               

               
               111-567, gnl|mm7|chr10 (6730088-6729666)
               

               
               111-567, gnl|Mm7|chr10 (6729593-6730057)
               

               
               111-567, gnl|monDom2|scaffold_0 (55615961-55615580)
               

               
               111-567, gnl|oryCun1|scaffold_211454 (17349-17771)
               

               
               111-567, gnl|panTro1|chr5 (154357973-154358400)
               

               
               111-567, gnl|rheMac2|chr4 (112662785-112662359)
               

               
               111-567, gnl|rn3|chr1 (34324098-34324523)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-567, gnl|bosTau2|chr23 (24917963-24918416)
               

               
               111-567, gnl|canFam2|chr1 (43993703-43994127)
               

               
               111-567, gnl|dasNov1|scaffold_112739 (5227-5635)
               

               
               111-567, gnl|echTel1|scaffold_177469 (253-653)
               

               
               111-567, gnl|hg17|chr6 (150863017-150863444)
               

               
               111-567, gnl|Hg17|chr6 (150863520-150863053)
               

               
               111-567, gnl|loxAfr1|scaffold_4061 (11051-11473)
               

               
               111-567, gnl|mm7|chr10 (6730088-6729666)
               

               
               111-567, gnl|Mm7|chr10 (6729593-6730057)
               

               
               111-567, gnl|monDom2|scaffold_0 (55615961-55615580)
               

               
               111-567, gnl|oryCun1|scaffold_211454 (17349-17771)
               

               
               111-567, gnl|panTro1|chr5 (154357973-154358400)
               

               
               111-567, gnl|rheMac2|chr4 (112662785-112662359)
               

               
               111-567, gnl|rn3|chr1 (34324098-34324523)

	111-567, gnl\|bosTau2\|chr23 (24917963-24918416)
	111-567, gnl\|canFam2\|chr1 (43993703-43994127)
	111-567, gnl\|dasNov1\|scaffold_112739 (5227-5635)
	111-567, gnl\|echTel1\|scaffold_177469 (253-653)
	111-567, gnl\|hg17\|chr6 (150863017-150863444)
	111-567, gnl\|Hg17\|chr6 (150863520-150863053)
	111-567, gnl\|loxAfr1\|scaffold_4061 (11051-11473)
	111-567, gnl\|mm7\|chr10 (6730088-6729666)
	111-567, gnl\|Mm7\|chr10 (6729593-6730057)
	111-567, gnl\|monDom2\|scaffold_0 (55615961-55615580)
	111-567, gnl\|oryCun1\|scaffold_211454 (17349-17771)
	111-567, gnl\|panTro1\|chr5 (154357973-154358400)
	111-567, gnl\|rheMac2\|chr4 (112662785-112662359)
	111-567, gnl\|rn3\|chr1 (34324098-34324523)