Non-Coding RNA Search

Lym2-sn60_B07.f

Sequence:


               
               AATTAGGGCATTCTTTACCCTCCACTGCATGGCAGATTAAGGATGATCACTAATTCTTTG
CTGCTCTTCCCATTAAGAGGTGGGAAGTATTTTCTCTCCCCTTGAATCCAGGATGATGAG
GGACTGTTTGATGCAGTGTATACAGAGTATAACAGAAGTGATATTACACCAGCTCAAGCC
TATTTTAAAGGACTAAGGGCTTCTGCCTTGGTCTCTTGGAGCCCTGAATTGACATCCTTT
TATACTGGAGAGACTACGAGCCCAGAGGAGTCCAGCTTCCTAACCGTCCCCTTTAAGGTG
CTGGGGCTTGTATGGGAAGGCAACTTGGATCCTCCAGACAACAGAGCCACTATTCTGTGA
AAATCCCATACAACTCGAGACATATAGGGACTGTCCCTTTGAGagccccagctgagctcc
cagccaatagccagcatcaattgccagccttatgagGGCAACATTTTGGATGACTAGCTC
ACTCAAACCTTCAAATAACCGCAACCCCAGCCAATATCTGACTACAGCTTCATGAGAAAG
CCCAAGCAAGAATTACCTAACTGAGCCCAATTCAGCCACAGAACTGTGAATCATAATGAC
AAATTAGTGTTCTAAACCACTATGTGTTGGGTAGTTTATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTAGGGCATTCTTTACCCTCCACTGCATGGCAGATTAAGGATGATCACTAATTCTTTG
CTGCTCTTCCCATTAAGAGGTGGGAAGTATTTTCTCTCCCCTTGAATCCAGGATGATGAG
GGACTGTTTGATGCAGTGTATACAGAGTATAACAGAAGTGATATTACACCAGCTCAAGCC
TATTTTAAAGGACTAAGGGCTTCTGCCTTGGTCTCTTGGAGCCCTGAATTGACATCCTTT
TATACTGGAGAGACTACGAGCCCAGAGGAGTCCAGCTTCCTAACCGTCCCCTTTAAGGTG
CTGGGGCTTGTATGGGAAGGCAACTTGGATCCTCCAGACAACAGAGCCACTATTCTGTGA
AAATCCCATACAACTCGAGACATATAGGGACTGTCCCTTTGAGagccccagctgagctcc
cagccaatagccagcatcaattgccagccttatgagGGCAACATTTTGGATGACTAGCTC
ACTCAAACCTTCAAATAACCGCAACCCCAGCCAATATCTGACTACAGCTTCATGAGAAAG
CCCAAGCAAGAATTACCTAACTGAGCCCAATTCAGCCACAGAACTGTGAATCATAATGAC
AAATTAGTGTTCTAAACCACTATGTGTTGGGTAGTTTATTAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               301-420, - strand, RNAz p=0.760056
               

               
               461-577, - strand, RNAz p=0.665703

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               301-420, - strand, RNAz p=0.760056
               

               
               461-577, - strand, RNAz p=0.665703

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-642, gnl|bosTau2|chr2 (63923791-63923172)
               

               
               18-642, gnl|Hg17|chr2 (217661301-217660674)
               

               
               18-642, gnl|Mm7|chr1 (73350464-73349932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-642, gnl|bosTau2|chr2 (63923791-63923172)
               

               
               18-642, gnl|Hg17|chr2 (217661301-217660674)
               

               
               18-642, gnl|Mm7|chr1 (73350464-73349932)

	301-420, - strand, RNAz p=0.760056
	461-577, - strand, RNAz p=0.665703

	18-642, gnl\|bosTau2\|chr2 (63923791-63923172)
	18-642, gnl\|Hg17\|chr2 (217661301-217660674)
	18-642, gnl\|Mm7\|chr1 (73350464-73349932)