Non-Coding RNA Search

Lym2-sn63_H03.f

Sequence:


               
               TCGCGATCTAGAACTAGTCCTTGTAGCTTATTTTATGCATCATAGTTTGTACTTCTTAAT
CCCCTACCTCTATCTTGACCTTCCTATCTTCCCTCTCCCCACTGGTAATCACTAGTTTGT
TCTCTATGAGTCTCCGTTAGTGCCCTCTGGGAACAGTATGCAGCCAAGGACCAACAGAGA
GTATGAAGCCAAAGCCCACCCACCCCTGGCCCAGCCCTGGGGCAGCAGGTGCCTCCTCCT
CAGGACTCCACAGTTAATGAGGTAATGGCCCCCTAGGGAAAGAGGCACTTAGTGCGGACA
ATGAGGCTAATTAGCAGACTGCCAATTAGTACCTGGGGAACCGCTATGCATGGGGGGGAG
GGGAAGTGTCTTGTTTGAAAGTGGCTGCTTCAGAGGAACAGAGGCCTGGCCTCAAAGGAG
AGGATGGGAGCAAGGTCACAGCATCTTCTCTCTCCACGTCGTCGTCCATAAGCACACTCC
TCTTCCAGGAAGACCTCCTAAACTATCCACCCTATATTCTTCTGTGTCTTCCTGCCCCTG
TCATCGATTCTGAGACTACGAATGAGGCTGGGGAAATAAAGGGCAAGAGCTCGGACCATG
GTAAACATTTTTTAAAATAGCAAAATACTTCAGATACACAGAAAGATATTATACATCTGT
ATGTATTTGTGTGTGTGTGTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGATCTAGAACTAGTCCTTGTAGCTTATTTTATGCATCATAGTTTGTACTTCTTAAT
CCCCTACCTCTATCTTGACCTTCCTATCTTCCCTCTCCCCACTGGTAATCACTAGTTTGT
TCTCTATGAGTCTCCGTTAGTGCCCTCTGGGAACAGTATGCAGCCAAGGACCAACAGAGA
GTATGAAGCCAAAGCCCACCCACCCCTGGCCCAGCCCTGGGGCAGCAGGTGCCTCCTCCT
CAGGACTCCACAGTTAATGAGGTAATGGCCCCCTAGGGAAAGAGGCACTTAGTGCGGACA
ATGAGGCTAATTAGCAGACTGCCAATTAGTACCTGGGGAACCGCTATGCATGGGGGGGAG
GGGAAGTGTCTTGTTTGAAAGTGGCTGCTTCAGAGGAACAGAGGCCTGGCCTCAAAGGAG
AGGATGGGAGCAAGGTCACAGCATCTTCTCTCTCCACGTCGTCGTCCATAAGCACACTCC
TCTTCCAGGAAGACCTCCTAAACTATCCACCCTATATTCTTCTGTGTCTTCCTGCCCCTG
TCATCGATTCTGAGACTACGAATGAGGCTGGGGAAATAAAGGGCAAGAGCTCGGACCATG
GTAAACATTTTTTAAAATAGCAAAATACTTCAGATACACAGAAAGATATTATACATCTGT
ATGTATTTGTGTGTGTGTGTGTGTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               248-365, - strand, RNAz p=0.928605
               

               
               398-517, + strand, RNAz p=0.994435

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-365, - strand, RNAz p=0.928605
               

               
               398-517, + strand, RNAz p=0.994435

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               20-133, gnl|bosTau2|chr1 (57783051-57782938)
               


               
               169-649, gnl|bosTau2|chr19 (14745498-14745041)
               

               
               169-649, gnl|Hg17|chr17 (4677943-4676362)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-133, gnl|bosTau2|chr1 (57783051-57782938)
               


               
               169-649, gnl|bosTau2|chr19 (14745498-14745041)
               

               
               169-649, gnl|Hg17|chr17 (4677943-4676362)

	248-365, - strand, RNAz p=0.928605
	398-517, + strand, RNAz p=0.994435

	20-133, gnl\|bosTau2\|chr1 (57783051-57782938)

	169-649, gnl\|bosTau2\|chr19 (14745498-14745041)
	169-649, gnl\|Hg17\|chr17 (4677943-4676362)