Non-Coding RNA Search

Lym2-sn64_F03.f

Sequence:


               
               AAAAAATCCAAGTTTATTCCAAAAGTTCCAGCAAAAAGGAAGGCTGGGAAAAAAAGAGGG
GCTGGGGATGGAAACCTTGGTCCTCCGCCAGCTTAACTAGAGAAACCATTTCCCCACTGA
AAGCGTTAATGGAAATGCCAGGCCAAAGCAGTCATTTGGAAATCGTTTTTTGACACTGGG
ACTTTTTATGAAATACGGGCTCAGTTGTAAAAAAAAATTGAAATTTGGAGTTTCCTATGA
CCATCCTCAGGTTCAATAATTTGCTAGGGTCATAAACCCACCCCTCCCCGGACCCGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAATCCAAGTTTATTCCAAAAGTTCCAGCAAAAAGGAAGGCTGGGAAAAAAAGAGGG
GCTGGGGATGGAAACCTTGGTCCTCCGCCAGCTTAACTAGAGAAACCATTTCCCCACTGA
AAGCGTTAATGGAAATGCCAGGCCAAAGCAGTCATTTGGAAATCGTTTTTTGACACTGGG
ACTTTTTATGAAATACGGGCTCAGTTGTAAAAAAAAATTGAAATTTGGAGTTTCCTATGA
CCATCCTCAGGTTCAATAATTTGCTAGGGTCATAAACCCACCCCTCCCCGGACCCGTGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               38-132, - strand, RNAz p=0.515824

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-132, - strand, RNAz p=0.515824

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               38-178, gnl|bosTau2|chr22 (26959717-26959857)
               

               
               38-178, gnl|canFam2|chr20 (28377746-28377073)
               

               
               38-178, gnl|hg17|chr3 (65928185-65928859)
               

               
               38-178, gnl|Hg17|chr3 (65928245-65928386)
               

               
               38-178, gnl|mm7|chr6 (94303210-94303906)
               

               
               38-178, gnl|Mm7|chr6 (94303269-94303406)
               

               
               38-178, gnl|oryCun1|scaffold_209036 (113880-113227)
               

               
               38-178, gnl|panTro1|chrUn_random (22428587-22427913)
               

               
               38-178, gnl|rheMac2|chr2 (70456250-70455575)
               

               
               38-178, gnl|rn3|chr4 (128773423-128774054)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-178, gnl|bosTau2|chr22 (26959717-26959857)
               

               
               38-178, gnl|canFam2|chr20 (28377746-28377073)
               

               
               38-178, gnl|hg17|chr3 (65928185-65928859)
               

               
               38-178, gnl|Hg17|chr3 (65928245-65928386)
               

               
               38-178, gnl|mm7|chr6 (94303210-94303906)
               

               
               38-178, gnl|Mm7|chr6 (94303269-94303406)
               

               
               38-178, gnl|oryCun1|scaffold_209036 (113880-113227)
               

               
               38-178, gnl|panTro1|chrUn_random (22428587-22427913)
               

               
               38-178, gnl|rheMac2|chr2 (70456250-70455575)
               

               
               38-178, gnl|rn3|chr4 (128773423-128774054)

	38-178, gnl\|bosTau2\|chr22 (26959717-26959857)
	38-178, gnl\|canFam2\|chr20 (28377746-28377073)
	38-178, gnl\|hg17\|chr3 (65928185-65928859)
	38-178, gnl\|Hg17\|chr3 (65928245-65928386)
	38-178, gnl\|mm7\|chr6 (94303210-94303906)
	38-178, gnl\|Mm7\|chr6 (94303269-94303406)
	38-178, gnl\|oryCun1\|scaffold_209036 (113880-113227)
	38-178, gnl\|panTro1\|chrUn_random (22428587-22427913)
	38-178, gnl\|rheMac2\|chr2 (70456250-70455575)
	38-178, gnl\|rn3\|chr4 (128773423-128774054)