Non-Coding RNA Search

Lym2-sn64_G06.f

Sequence:


               
               TCGCGATCTAGAACTAGTCTCTCGGTCCAACACAGTTGATATACATTTGTTTACCTGTTA
TAGTTGCAAGTTGTACAGGCTGACATTGCCTCGATCGACAGTGACGCTGTCGTTCACCCG
ACAAACACTGACTTCTACACCGGTGGTGAAGTAGGTAATGCCTAGCCGGGTGCTGCCGAG
TGTGTGTGTGCATGGTCAGTCGGCCGCTGCAGACAGCTTGATCCTTTGACAGCTATGCAG
GGCTGCATTCATTTCACACTTCCAGCTGTCCTGACCTTCCCCAGGTCTCCCGTCCCGGGG
TTGTGAATGCGAGAAATCCAGCGAGCTCTCAGCCAGGTTGCATCATGCAGCTCATGGATG
GGCACACTTCTGGTTTGGAACCTGGTTCAGCAACATCATTTCTTCACCTGCTTCCTGAGG
CCCAGCTTTGTTGGAGACTGGGTGCACTGGTGCCTGGAGCTGTGAGGGGGATGCGGCCAG
ATCAGCTGAGCGGGCACCCAAGACCCCTTCTGTGGGCCAGACACCCAGGGCTGCTTGGGC
ACAGGTCTGCGCTAGAAACACCATCAGTCCTGAAAAGGGCCTTCGAGCCTCAGGTGCCCG
TGGGGGCAGTTTTAGAACAGCCTCCCAACTCAGGGGTTCTCAGAACTTATATGCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGATCTAGAACTAGTCTCTCGGTCCAACACAGTTGATATACATTTGTTTACCTGTTA
TAGTTGCAAGTTGTACAGGCTGACATTGCCTCGATCGACAGTGACGCTGTCGTTCACCCG
ACAAACACTGACTTCTACACCGGTGGTGAAGTAGGTAATGCCTAGCCGGGTGCTGCCGAG
TGTGTGTGTGCATGGTCAGTCGGCCGCTGCAGACAGCTTGATCCTTTGACAGCTATGCAG
GGCTGCATTCATTTCACACTTCCAGCTGTCCTGACCTTCCCCAGGTCTCCCGTCCCGGGG
TTGTGAATGCGAGAAATCCAGCGAGCTCTCAGCCAGGTTGCATCATGCAGCTCATGGATG
GGCACACTTCTGGTTTGGAACCTGGTTCAGCAACATCATTTCTTCACCTGCTTCCTGAGG
CCCAGCTTTGTTGGAGACTGGGTGCACTGGTGCCTGGAGCTGTGAGGGGGATGCGGCCAG
ATCAGCTGAGCGGGCACCCAAGACCCCTTCTGTGGGCCAGACACCCAGGGCTGCTTGGGC
ACAGGTCTGCGCTAGAAACACCATCAGTCCTGAAAAGGGCCTTCGAGCCTCAGGTGCCCG
TGGGGGCAGTTTTAGAACAGCCTCCCAACTCAGGGGTTCTCAGAACTTATATGCACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5833938|gb|AAD53746.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5833938|gb|AAD53746.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               59-338, - strand, RNAz p=0.931262

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-338, - strand, RNAz p=0.931262

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-429, gnl|bosTau2|chr7 (33086606-33087015)
               

               
               20-429, gnl|Hg17|chr5 (134714546-134714133)
               

               
               20-429, gnl|Mm7|chr13 (55177703-55177301)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-429, gnl|bosTau2|chr7 (33086606-33087015)
               

               
               20-429, gnl|Hg17|chr5 (134714546-134714133)
               

               
               20-429, gnl|Mm7|chr13 (55177703-55177301)

	20-429, gnl\|bosTau2\|chr7 (33086606-33087015)
	20-429, gnl\|Hg17\|chr5 (134714546-134714133)
	20-429, gnl\|Mm7\|chr13 (55177703-55177301)