Non-Coding RNA Search

Lym2-sn68_H12.f

Sequence:


               
               CGCTTTCCTTTGTCTGCATTGCCCTTTCCCACCTCTGAGTATCTGGACCTTCTCACTATG
CTAGGTTTATAACATGGATGTACAAATTACTGTTTGCATGAAAAGAGCAGATTACAAAAC
AGTTTGTACTCTGTAGTATGATCTCATCTTATCTATGGGTTTAAATAGCTACTGTGTGTA
TTTGTAGAAAATAATGCAGTGGACTGGCCTCTCTGGGTGAAGACATTATGGGTAATATTT
ATCTTCTGTATCTTTTCTCATCTTTTTTGAAATTTTAGAGTGGGTGTATGTTATGTGTAT
AATTCAAAAAAAGCCCTAAAAAGTATTTCTTTTCCTTATTCCCTTAACTCTTACTTTTTT
GTGATAAAATTAGGTTGGCAGGTTTTACTGACTTTGGTTTGATGCTTTCTGAGTGTGAGG
CAGTGTTTTATGTGAGCTTGTCATGAAGCTCCATGTCACAATTTTGTTTTTGAAGTTTCA
ATTCTAAGGTTATCTATTTCTTACCCTAAAACACCTCCAGAGGTCTAGATGTGCTGTCAT
TAGGTGGGGCTAATGAGCTTGGTTGTGCTCTAAACTGCAGGGCCCACCCTGATTTAAATG
TGACTTTTCTGGAACATAATTTATGTAACGATAGAACTCTATTAAAAATACTAAATACAA
ACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTTTCCTTTGTCTGCATTGCCCTTTCCCACCTCTGAGTATCTGGACCTTCTCACTATG
CTAGGTTTATAACATGGATGTACAAATTACTGTTTGCATGAAAAGAGCAGATTACAAAAC
AGTTTGTACTCTGTAGTATGATCTCATCTTATCTATGGGTTTAAATAGCTACTGTGTGTA
TTTGTAGAAAATAATGCAGTGGACTGGCCTCTCTGGGTGAAGACATTATGGGTAATATTT
ATCTTCTGTATCTTTTCTCATCTTTTTTGAAATTTTAGAGTGGGTGTATGTTATGTGTAT
AATTCAAAAAAAGCCCTAAAAAGTATTTCTTTTCCTTATTCCCTTAACTCTTACTTTTTT
GTGATAAAATTAGGTTGGCAGGTTTTACTGACTTTGGTTTGATGCTTTCTGAGTGTGAGG
CAGTGTTTTATGTGAGCTTGTCATGAAGCTCCATGTCACAATTTTGTTTTTGAAGTTTCA
ATTCTAAGGTTATCTATTTCTTACCCTAAAACACCTCCAGAGGTCTAGATGTGCTGTCAT
TAGGTGGGGCTAATGAGCTTGGTTGTGCTCTAAACTGCAGGGCCCACCCTGATTTAAATG
TGACTTTTCTGGAACATAATTTATGTAACGATAGAACTCTATTAAAAATACTAAATACAA
ACTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               416-531, - strand, RNAz p=0.910437

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               416-531, - strand, RNAz p=0.910437

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               102-663, gnl|bosTau2|chr2 (53199572-53199000)
               

               
               102-663, gnl|canFam2|chr37 (9096868-9097205)
               

               
               102-663, gnl|hg17|chr2 (197143861-197144237)
               

               
               102-663, gnl|mm7|chr1 (54287532-54287813)
               

               
               102-663, gnl|Mm7|chr1 (54288011-54287532)
               

               
               102-663, gnl|oryCun1|scaffold_169760 (17949-17597)
               

               
               102-663, gnl|panTro1|chr13 (87063127-87063503)
               

               
               102-663, gnl|rheMac2|chr12 (60091766-60092142)
               

               
               102-663, gnl|rn3|chr9 (52855816-52856133)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-663, gnl|bosTau2|chr2 (53199572-53199000)
               

               
               102-663, gnl|canFam2|chr37 (9096868-9097205)
               

               
               102-663, gnl|hg17|chr2 (197143861-197144237)
               

               
               102-663, gnl|mm7|chr1 (54287532-54287813)
               

               
               102-663, gnl|Mm7|chr1 (54288011-54287532)
               

               
               102-663, gnl|oryCun1|scaffold_169760 (17949-17597)
               

               
               102-663, gnl|panTro1|chr13 (87063127-87063503)
               

               
               102-663, gnl|rheMac2|chr12 (60091766-60092142)
               

               
               102-663, gnl|rn3|chr9 (52855816-52856133)

	102-663, gnl\|bosTau2\|chr2 (53199572-53199000)
	102-663, gnl\|canFam2\|chr37 (9096868-9097205)
	102-663, gnl\|hg17\|chr2 (197143861-197144237)
	102-663, gnl\|mm7\|chr1 (54287532-54287813)
	102-663, gnl\|Mm7\|chr1 (54288011-54287532)
	102-663, gnl\|oryCun1\|scaffold_169760 (17949-17597)
	102-663, gnl\|panTro1\|chr13 (87063127-87063503)
	102-663, gnl\|rheMac2\|chr12 (60091766-60092142)
	102-663, gnl\|rn3\|chr9 (52855816-52856133)