Non-Coding RNA Search

Lym2-sn80_G06.f

Sequence:


               
               TCGCGATCTAGAACTAGTCTAACTTTCAGGATTATAGAATTAAGAACACCAAAAATCTGC
TCCTCAATAAAAGCAACAAGAATACTGCCAAAAAATGTCAAAAGAACTTTTTTATTAACA
TGGTCTCAACATTGGTTAGACTCTAATTGGAGGCAGCCTGTGAGAGCAGTTTAGCTGGTG
TATTTTTTGACATTAGAGACATATTTAGATGATTGGGAGGGAGTATCCGAGAGATGGAGG
TTTTTGAAAATCATTAAACTTTACATTCAGATAAGATCAAATGTCACAAAGGGGCAGAGA
GAGGTTTGGAATGCCAGCCCGAAAGACTGCTTTGAAATCACCAGCTCATATACTCTGCAA
AGAAAATAAGAAAATACAACCTACAGTTTTTGGATGATTATTCAAACATTCTTCTTTTCA
CACTTGTAGTTTAAATGCTGTTTGTTTAGTTTTGTCATCTGTAAATACGAGTAGATGATT
AAACGCAGGGCAGGCCCCCGTGTTCATACCTTTACCGTGAAGTGATGCCAGTAACCCCAT
CATGGACGGAATGTGAGTTGCCTGGAGCAGTGTCCACACGGCAAAGGCGAAGGCAGCATC
TTCTCTTACTACTGCTGCAAGTAGAAAGGTCTCTGGCGTATGTACAATATCATAGTTAAA
ATACTGACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGATCTAGAACTAGTCTAACTTTCAGGATTATAGAATTAAGAACACCAAAAATCTGC
TCCTCAATAAAAGCAACAAGAATACTGCCAAAAAATGTCAAAAGAACTTTTTTATTAACA
TGGTCTCAACATTGGTTAGACTCTAATTGGAGGCAGCCTGTGAGAGCAGTTTAGCTGGTG
TATTTTTTGACATTAGAGACATATTTAGATGATTGGGAGGGAGTATCCGAGAGATGGAGG
TTTTTGAAAATCATTAAACTTTACATTCAGATAAGATCAAATGTCACAAAGGGGCAGAGA
GAGGTTTGGAATGCCAGCCCGAAAGACTGCTTTGAAATCACCAGCTCATATACTCTGCAA
AGAAAATAAGAAAATACAACCTACAGTTTTTGGATGATTATTCAAACATTCTTCTTTTCA
CACTTGTAGTTTAAATGCTGTTTGTTTAGTTTTGTCATCTGTAAATACGAGTAGATGATT
AAACGCAGGGCAGGCCCCCGTGTTCATACCTTTACCGTGAAGTGATGCCAGTAACCCCAT
CATGGACGGAATGTGAGTTGCCTGGAGCAGTGTCCACACGGCAAAGGCGAAGGCAGCATC
TTCTCTTACTACTGCTGCAAGTAGAAAGGTCTCTGGCGTATGTACAATATCATAGTTAAA
ATACTGACTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               93-208, + strand, RNAz p=0.581394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-208, + strand, RNAz p=0.581394

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               93-669, gnl|bosTau2|chr12 (28510202-28510776)
               

               
               93-669, gnl|canFam2|chr22 (34362902-34363324)
               

               
               93-669, gnl|dasNov1|scaffold_41476 (5845-6274)
               

               
               93-669, gnl|echTel1|scaffold_3022 (2785-3212)
               

               
               93-669, gnl|hg17|chr13 (77369147-77369557)
               

               
               93-669, gnl|Hg17|chr13 (77369921-77369181)
               

               
               93-669, gnl|loxAfr1|scaffold_7037 (80438-80034)
               

               
               93-669, gnl|mm7|chr14 (98248428-98248854)
               

               
               93-669, gnl|Mm7|chr14 (98249049-98248462)
               

               
               93-669, gnl|monDom2|scaffold_8 (15804743-15805131)
               

               
               93-669, gnl|oryCun1|scaffold_137002 (6793-7204)
               

               
               93-669, gnl|panTro1|chr14 (60007875-60008285)
               

               
               93-669, gnl|rheMac2|chr17 (58387885-58388295)
               

               
               93-669, gnl|rn3|chr15 (87908283-87908707)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-669, gnl|bosTau2|chr12 (28510202-28510776)
               

               
               93-669, gnl|canFam2|chr22 (34362902-34363324)
               

               
               93-669, gnl|dasNov1|scaffold_41476 (5845-6274)
               

               
               93-669, gnl|echTel1|scaffold_3022 (2785-3212)
               

               
               93-669, gnl|hg17|chr13 (77369147-77369557)
               

               
               93-669, gnl|Hg17|chr13 (77369921-77369181)
               

               
               93-669, gnl|loxAfr1|scaffold_7037 (80438-80034)
               

               
               93-669, gnl|mm7|chr14 (98248428-98248854)
               

               
               93-669, gnl|Mm7|chr14 (98249049-98248462)
               

               
               93-669, gnl|monDom2|scaffold_8 (15804743-15805131)
               

               
               93-669, gnl|oryCun1|scaffold_137002 (6793-7204)
               

               
               93-669, gnl|panTro1|chr14 (60007875-60008285)
               

               
               93-669, gnl|rheMac2|chr17 (58387885-58388295)
               

               
               93-669, gnl|rn3|chr15 (87908283-87908707)

	93-669, gnl\|bosTau2\|chr12 (28510202-28510776)
	93-669, gnl\|canFam2\|chr22 (34362902-34363324)
	93-669, gnl\|dasNov1\|scaffold_41476 (5845-6274)
	93-669, gnl\|echTel1\|scaffold_3022 (2785-3212)
	93-669, gnl\|hg17\|chr13 (77369147-77369557)
	93-669, gnl\|Hg17\|chr13 (77369921-77369181)
	93-669, gnl\|loxAfr1\|scaffold_7037 (80438-80034)
	93-669, gnl\|mm7\|chr14 (98248428-98248854)
	93-669, gnl\|Mm7\|chr14 (98249049-98248462)
	93-669, gnl\|monDom2\|scaffold_8 (15804743-15805131)
	93-669, gnl\|oryCun1\|scaffold_137002 (6793-7204)
	93-669, gnl\|panTro1\|chr14 (60007875-60008285)
	93-669, gnl\|rheMac2\|chr17 (58387885-58388295)
	93-669, gnl\|rn3\|chr15 (87908283-87908707)